View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20120_low_13 (Length: 278)

Name: NF20120_low_13
Description: NF20120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20120_low_13
NF20120_low_13
[»] chr2 (5 HSPs)
chr2 (98-262)||(31331965-31332129)
chr2 (98-262)||(31338694-31338859)
chr2 (126-262)||(30269099-30269235)
chr2 (188-255)||(31481979-31482044)
chr2 (98-182)||(30269236-30269328)
[»] chr8 (5 HSPs)
chr8 (98-262)||(25641052-25641216)
chr8 (146-262)||(27813901-27814017)
chr8 (150-235)||(4756122-4756207)
chr8 (166-248)||(4743905-4743987)
chr8 (117-164)||(4756144-4756191)
[»] chr3 (3 HSPs)
chr3 (98-262)||(7403944-7404108)
chr3 (141-256)||(36086937-36087052)
chr3 (212-256)||(16456650-16456694)
[»] chr7 (2 HSPs)
chr7 (107-262)||(4682951-4683106)
chr7 (126-235)||(1528124-1528233)
[»] chr4 (3 HSPs)
chr4 (126-262)||(53302425-53302561)
chr4 (126-182)||(53302645-53302701)
chr4 (126-182)||(53302562-53302618)
[»] chr6 (1 HSPs)
chr6 (98-262)||(30824998-30825162)
[»] chr5 (3 HSPs)
chr5 (98-262)||(37190453-37190617)
chr5 (98-262)||(7413066-7413230)
chr5 (98-262)||(5075993-5076157)
[»] chr1 (1 HSPs)
chr1 (161-248)||(47694191-47694278)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 31331965 - 31332129
Alignment:
Q  98 ataaaatgctgcaaccaaactttatgtcacaatgcctgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgat 197  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31331965 ataaaatgctgcaaccaaactttatgacacaatgcctgttttctgtttgataaaatgcttcaatcaacctttatggtacagtgcttaatgtttgtctgat 31332064  T
Q  198 aaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatg 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31332065 aaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatg 31332129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 31338694 - 31338859
Alignment:
Q  98 ataaaatgctgcaaccaaactttatgtcacaatgcctgtattctgtttgataaaatgcttcaatcaaccttt-atggtacaatgcttaatgtttgtctga 196  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  31338694 ataaaatgctgcaaccaaactttatgacacaatgcctgttttctgtttgataaaatgcttcaatcaaccttttatggtacagtgcttaatgtttgtctga 31338793  T
Q  197 taaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31338794 taaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatg 31338859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 126 - 262
Target Start/End: Complemental strand, 30269235 - 30269099
Alignment:
Q  126 acaatgcctgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttact 225  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30269235 acaatgcttgttttctgtttgataaaatgcttcaatctacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttact 30269136  T
Q  226 tctctaatctcagaaatgtgattctcctgcatctatg 262  Q
    |||||||||||||||||||||||||||||||||||||    
T  30269135 tctctaatctcagaaatgtgattctcctgcatctatg 30269099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 31482044 - 31481979
Alignment:
Q  188 tttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgc 255  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||  |||| ||||||||||| ||||    
T  31482044 tttgtttgataaaatgcttaagccaaattttatttacttctctaa--tcagtaatgtgattcttctgc 31481979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 30269328 - 30269236
Alignment:
Q  98 ataaaatgctgcaaccaaactttatgtcacaatgcc--------tgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgct 182  Q
    |||||||||||||||||||||||||| ||||||||         ||| ||||||||||||||||||||||||||| |||| ||  ||||||||    
T  30269328 ataaaatgctgcaaccaaactttatgacacaatgctacaatgcttgttttctgtttgataaaatgcttcaatcaaactttttgacacaatgct 30269236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 25641216 - 25641052
Alignment:
Q  98 ataaaatgctgcaaccaaactttatgtcacaatgcctgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgat 197  Q
    |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25641216 ataaaatgatgcaaccaaactttatgacacaatgcctgttttctgtttgataaaatgcttcaatcaacctttatggtacagtgcttaatgtttgtctgat 25641117  T
Q  198 aaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatg 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25641116 aaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatg 25641052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 27814017 - 27813901
Alignment:
Q  146 gataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtg 245  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27814017 gataaaatgcttcaatcaacctttatggtacaatgcttgatttttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagcaatgtg 27813918  T
Q  246 attctcctgcatctatg 262  Q
    |||||||||||||||||    
T  27813917 attctcctgcatctatg 27813901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 4756207 - 4756122
Alignment:
Q  150 aaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatct 235  Q
    |||||||| || ||| ||||||||||||||||||  | | ||| ||||||||||||| || ||||||| |||||||||||||||||    
T  4756207 aaatgctttaaacaatctttatggtacaatgcttgttttctgtttgataaaatgcttcaatcaaatttgatttacttctctaatct 4756122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 4743987 - 4743905
Alignment:
Q  166 ctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgatt 248  Q
    |||||||||| |||||||  | | ||| |||| |||||||| ||||| ||| ||||||||||||||||||||| |||||||||    
T  4743987 ctttatggtataatgcttgttttctgtttgatgaaatgcttcaaccagattgtatttacttctctaatctcagtaatgtgatt 4743905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 4756191 - 4756144
Alignment:
Q  117 ctttatgtcacaatgcctgtattctgtttgataaaatgcttcaatcaa 164  Q
    |||||||  ||||||| ||| |||||||||||||||||||||||||||    
T  4756191 ctttatggtacaatgcttgttttctgtttgataaaatgcttcaatcaa 4756144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 7403944 - 7404108
Alignment:
Q  98 ataaaatgctgcaaccaaactttatgtcacaatgcctgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgat 197  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7403944 ataaaatgctgcaaccaaactttatgacacaatgcctgttttctgtttgataaaatgcttcaatcaacctttatggtacagtgcttaatgtttgtctgat 7404043  T
Q  198 aaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatg 262  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  7404044 aaaatgcttgaaccaaatattatttactcctctaatctcagaaatgtgattctcctgcatctatg 7404108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 36087052 - 36086937
Alignment:
Q  141 tgtttgataaaatgcttcaatcaaccttt-atggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcaga 239  Q
    |||||||||||||||||||| ||| |||| |||||||||| | |  | | ||| ||||||||||||| ||||||||||| ||||||| |||||||||||     
T  36087052 tgtttgataaaatgcttcaaccaaacttttatggtacaattcatgttttatgtttgataaaatgcttcaaccaaattttgtttactt-tctaatctcagt 36086954  T
Q  240 aatgtgattctcctgca 256  Q
    ||| ||||||| |||||    
T  36086953 aatctgattcttctgca 36086937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 16456650 - 16456694
Alignment:
Q  212 aaattttatttacttctctaatctcagaaatgtgattctcctgca 256  Q
    |||||||||||||||||||||||| || |||||||||||||||||    
T  16456650 aaattttatttacttctctaatcttagtaatgtgattctcctgca 16456694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 107 - 262
Target Start/End: Original strand, 4682951 - 4683106
Alignment:
Q  107 tgcaaccaaactttatgtcacaatgcctgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgataaaatgctt 206  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4682951 tgcaaccaaactttatgacacaatgcctgttttctgtttgataaaatgcttcaatcaacctttatggtacagtgcttaatgtttgtctgataaaatgctt 4683050  T
Q  207 gaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4683051 gaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatg 4683106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 235
Target Start/End: Original strand, 1528124 - 1528233
Alignment:
Q  126 acaatgcctgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttact 225  Q
    ||||||| ||| || ||||||||||||  |||||| |||  ||||||||| |||||||  |   | | ||||||||||||| ||||||||||||||||||    
T  1528124 acaatgcttgttttttgtttgataaaaaacttcaaccaaaatttatggtagaatgcttgcttactttttgataaaatgcttcaaccaaattttatttact 1528223  T
Q  226 tctctaatct 235  Q
    ||| ||||||    
T  1528224 tctttaatct 1528233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 126 - 262
Target Start/End: Complemental strand, 53302561 - 53302425
Alignment:
Q  126 acaatgcctgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttact 225  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53302561 acaatgcttgttttctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttact 53302462  T
Q  226 tctctaatctcagaaatgtgattctcctgcatctatg 262  Q
    |||||||||||||||||||||||||||||||||||||    
T  53302461 tctctaatctcagaaatgtgattctcctgcatctatg 53302425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 53302701 - 53302645
Alignment:
Q  126 acaatgcctgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgct 182  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||||  ||||||||    
T  53302701 acaatgcctgttttctgtttgataaaatgcttcaatcaaattttatgacacaatgct 53302645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 53302618 - 53302562
Alignment:
Q  126 acaatgcctgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgct 182  Q
    ||||||| ||| ||||||||||||||||||||||||||  |||||||  ||||||||    
T  53302618 acaatgcttgttttctgtttgataaaatgcttcaatcagactttatgacacaatgct 53302562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 30825162 - 30824998
Alignment:
Q  98 ataaaatgctgcaaccaaactttatgtcacaatgcctgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgat 197  Q
    |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  30825162 ataaaatgctgcaaccaaactttatgactcaatgcttgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgcttgatttttgtctgat 30825063  T
Q  198 aaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatg 262  Q
     |||||  ||||||||||||||||||||  ||||||||||  |||||||||||||||||||||||    
T  30825062 caaatgagtgaaccaaattttatttactaatctaatctcatcaatgtgattctcctgcatctatg 30824998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 37190617 - 37190453
Alignment:
Q  98 ataaaatgctgcaaccaaactttatgtcacaatgcctgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgat 197  Q
    |||||||||| |||| |||||||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  37190617 ataaaatgcttcaactaaactttatgacacaatgcttgttttgtgtttgataaaatgcttcaatcaacctttatggtacaatgcttgatttttgtttgat 37190518  T
Q  198 aaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatg 262  Q
    |||||| |||||| |||||||||||||||||| ||| || | ||||||||||||| |||||||||    
T  37190517 aaaatgtttgaactaaattttatttacttctcgaatatctgtaatgtgattctccagcatctatg 37190453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 7413230 - 7413066
Alignment:
Q  98 ataaaatgctgcaaccaaactttatgtcacaatgcctgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgat 197  Q
    |||||||||| |||| |||||||||| |||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||    
T  7413230 ataaaatgcttcaactaaactttatgacacaatgcttgttttgtgtttgataaaatgcctcaatcaacctttatggtacaatgcttgatttttgtttgat 7413131  T
Q  198 aaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatg 262  Q
    ||||||||||||||||||||| |||||||||| ||| |  | ||||||||||||| |||||||||    
T  7413130 aaaatgcttgaaccaaattttttttacttctcgaatatttgtaatgtgattctccagcatctatg 7413066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 5075993 - 5076157
Alignment:
Q  98 ataaaatgctgcaaccaaactttatgtcacaatgcctgtattctgtttgataaaatgcttcaatcaacctttatggtacaatgcttaatgtttgtctgat 197  Q
    |||||||||| |||| |||||||||| |||| | | ||| || ||||||||||||||| ||||||||||||||||||||||||||| || ||||| ||||    
T  5075993 ataaaatgcttcaactaaactttatgacacagttcttgttttgtgtttgataaaatgcctcaatcaacctttatggtacaatgcttgatttttgtttgat 5076092  T
Q  198 aaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgattctcctgcatctatg 262  Q
    |||||||||||||||||||||||||||||||| ||  || | ||||||||||||| |||||||||    
T  5076093 aaaatgcttgaaccaaattttatttacttctcaaaaatctgtaatgtgattctccagcatctatg 5076157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 47694191 - 47694278
Alignment:
Q  161 tcaacctttatggtacaatgcttaatgtttgtctgataaaatgcttgaaccaaattttatttacttctctaatctcagaaatgtgatt 248  Q
    |||| |||||||||||||||| |  | | ||| |||||||||||||  |||||||||||||||||||||||||||| | |||||||||    
T  47694191 tcaaactttatggtacaatgcatcttttgtgtttgataaaatgcttcgaccaaattttatttacttctctaatctccgtaatgtgatt 47694278  T

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