View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20120_low_28 (Length: 222)
Name: NF20120_low_28
Description: NF20120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20120_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 48144703 - 48144496
Alignment:
| Q |
1 |
ccatgggtaccgagtccttgttgccatgcctaaagtgatagaatatttatcttagattttgtaagaggtatacttattttagacgactaagcaaatataa |
100 |
Q |
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| T |
48144703 |
ccatgggtaccgagtccttgttgccatgcctaaagtgatagaatatttatcttagattttgtaagaggtatacttattttagacgactaagcaaatataa |
48144604 |
T |
|
| Q |
101 |
cacccctaaagcaaatagtattaagatggaattgattgattttatattttcaattgataactattacctttcaagttgaatt-cttctttaattaataga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48144603 |
cacccctaaagcaaatagtattaagatggaattgattgattttatattttcaattgataactattacctttcaagttgaattagttctttaattaataga |
48144504 |
T |
|
| Q |
200 |
tatcctat |
207 |
Q |
| |
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|||||||| |
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|
| T |
48144503 |
tatcctat |
48144496 |
T |
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