View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20120_low_32 (Length: 204)
Name: NF20120_low_32
Description: NF20120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20120_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 13838360 - 13838189
Alignment:
| Q |
20 |
ctttcttcattgtcttcttcacagatatcccaagctagtagtttcttctctatacttttcctttttgcaatcttaagtataccttctcaattataacata |
119 |
Q |
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||||||||||||||||||||||| ||||| ||| || ||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||||||||| |
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| T |
13838360 |
ctttcttcattgtcttcttcacaaatatctcaatctc-tagtttcttctctatgctttttctttttgcaatcttaattattccttctcaattataacata |
13838262 |
T |
|
| Q |
120 |
gtataaagctattaatttcataggctatgatgaatcatagagatagt-atgcaccactctgattttctgtgct |
191 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| |
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| T |
13838261 |
gtataaagctattaatttcataggctatgatgaatcatagagatagtcatgcaccactttgatttcctgtgct |
13838189 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 1294013 - 1293842
Alignment:
| Q |
20 |
ctttcttcattgtcttcttcacagatatcccaagctagtagtttcttctctatacttttcctttttgcaatcttaagtataccttctcaattataacata |
119 |
Q |
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||||||||||||||||||||||| ||||| ||| || ||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||||||||| |
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| T |
1294013 |
ctttcttcattgtcttcttcacaaatatctcaatctc-tagtttcttctctatgctttttctttttgcaatcttaattattccttctcaattataacata |
1293915 |
T |
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| Q |
120 |
gtataaagctattaatttcataggctatgatgaatcatagagatagt-atgcaccactctgattttctgtgct |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| |
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| T |
1293914 |
gtataaagctattaatttcataggctatgatgaatcatagagatagtcatgcaccactttgatttcctgtgct |
1293842 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 43313319 - 43313148
Alignment:
| Q |
20 |
ctttcttcattgtcttcttcacagatatcccaagctagtagtttcttctctatacttttcctttttgcaatcttaagtataccttctcaattataacata |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| || ||||||||||||||| ||||| |||||||||||||||| ||| | ||||||||||||||||| |
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| T |
43313319 |
ctttcttcattgtcttcttcacaaatatctcaatctc-tagtttcttctctatgctttttctttttgcaatcttaattattcattctcaattataacata |
43313221 |
T |
|
| Q |
120 |
gtataaagctattaatttcataggctatgatgaatcatagagatagt-atgcaccactctgattttctgtgct |
191 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| ||||||| |
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| T |
43313220 |
gtataaagctattaatttcataggctatgatgaatcatagagatagtcatgcaccactttaatttcctgtgct |
43313148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 26543925 - 26543746
Alignment:
| Q |
20 |
ctttcttcattgtcttcttcacagatatcccaagctagtagtttcttctctatacttttcctttttgcaatcttaagtataccttctcaattataacata |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| || ||||||||||||||| ||||| |||||||||||||||| ||| | ||||||||||||||||| |
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| T |
26543925 |
ctttcttcattgtcttcttcacaaatatctcaatctc-tagtttcttctctatgctttttctttttgcaatcttaattattcattctcaattataacata |
26543827 |
T |
|
| Q |
120 |
--------gtataaagctattaatttcataggctatgatgaatcatagagatagt-atgcaccactctgattttctgtgct |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| |
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| T |
26543826 |
ataacatagtataaagctattaatttcataggctatgatgaatcatagagatagtcatgcaccactttgatttcctgtgct |
26543746 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 7975050 - 7975221
Alignment:
| Q |
20 |
ctttcttcattgtcttcttcacagatatcccaagctagtagtttcttctctatacttttcctttttgcaatcttaagtataccttctcaattataacata |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || ||||||||||||||| ||||| |||||||| ||||||| ||| |||||| |||||||||||| |
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| T |
7975050 |
ctttcttcattgtcttcttcacaaatatctcactctc-tagtttcttctctatgctttttctttttgcgatcttaattattccttcttaattataacata |
7975148 |
T |
|
| Q |
120 |
gtataaagctattaatttcataggctatgatgaatcatagagatagt-atgcaccactctgattttctgtgct |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| |
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| T |
7975149 |
gtataaagctattaatttcataggctatgatgaatcatagagatagtcatgcaccactttgatttcctgtgct |
7975221 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 8264044 - 8264084
Alignment:
| Q |
142 |
ggctatgatgaatcatagagatagt-atgcaccactctgat |
181 |
Q |
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| T |
8264044 |
ggctatgatgaatcatagagatagtcatgcaccactctgat |
8264084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 8277462 - 8277502
Alignment:
| Q |
142 |
ggctatgatgaatcatagagatagt-atgcaccactctgat |
181 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8277462 |
ggctatgatgaatcatagagatagtcatgcaccactctgat |
8277502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 9901113 - 9901063
Alignment:
| Q |
142 |
ggctatgatgaatcatagagatagt-atgcaccactctgattttctgtgct |
191 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||| ||||||| |
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| T |
9901113 |
ggctatgatgaattttagagatagtcatgcaccactctgatttcctgtgct |
9901063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 33032851 - 33032891
Alignment:
| Q |
142 |
ggctatgatgaatcatagagatagt-atgcaccactctgat |
181 |
Q |
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| T |
33032851 |
ggctatgatgagtcatagagatagtcatgcaccactctgat |
33032891 |
T |
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