View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20120_low_6 (Length: 399)
Name: NF20120_low_6
Description: NF20120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20120_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 389
Target Start/End: Complemental strand, 47625290 - 47624912
Alignment:
| Q |
11 |
cagcacagacaagagggagaaagattcttcagagaggtgcctgttgaagatcagctctatagttattcctccttcactggagctctccaaggtaccaatt |
110 |
Q |
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| T |
47625290 |
cagcacagacaagagggagaaagattcttcagagaggtgcctgttgaagatcagctctatagttattcctccttcactggagctctccaaggtaacaatt |
47625191 |
T |
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| Q |
111 |
accttcaatattaagagatgactctgtactctcagtggcatgacatgattttactatagctgtttaagctgctagattattgttgtttagtgtttatatg |
210 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625190 |
accttcaatattaagagatgactctgtactgtcagtggcatgacatgattttactatagctgtttaagctgctagattattgttgtttagtgtttatatg |
47625091 |
T |
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| Q |
211 |
tctgtgcaaattattcaagttaactctgctgcctgcaagttttgctgtggtagacaatgatctaaatatcgttttttggggtattgcaatgtggaaaaca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625090 |
tctgtgcaaattattcaagttaactctgctgcctgcaagttttgctgtggtagacaatgatctaaatatcgttttttggggtattgcaatgtggaaaaca |
47624991 |
T |
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| Q |
311 |
aaacaaactatgtcatgaccatgacatttcataactgtactataaagtttcatgcaatggtttatacatgtgctctctg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624990 |
aaacaaactatgtcatgaccatgacatttcataactgtactataaagtttcatgcaatggtttatacatgtgctctctg |
47624912 |
T |
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