View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20120_low_8 (Length: 329)
Name: NF20120_low_8
Description: NF20120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20120_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 5414592 - 5414906
Alignment:
| Q |
1 |
cccaataactgcatcaacgacttgggataagaaggaacaaaaacctttgcatcactttgtagtataaacttattcacatctgcatctgttgaaacaatgg |
100 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5414592 |
cccattaactgcatcaatgacttgggataagaaggaacaaaaacctttgcatcactttgtagtataaacttattcacatctgcatctgttgaaacaatgg |
5414691 |
T |
|
| Q |
101 |
tagggcttccaaatatgtgtgacttgaacactttaccatacctacaacaatttgcaacagcacaccaaaaatccttgtcaaaaacaaacaatctcgcgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5414692 |
tagggcttccaaatatgtgtgacttgaacactttaccatacctgcaacaatttgcaacagcacaccacaaatccttgtcaaaaacaaacaatctcgcgtg |
5414791 |
T |
|
| Q |
201 |
gcttttcttatttttcattaaagtgacactaacgaccattttactggcaaacacactttctatgaagctttatctcttgagcttcatagaaaggtagcta |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5414792 |
gcttttcttatttttaattaaagtgacactaacgaccattttactgacaaacacactttctatgaagctttgtctcttgagcttcatagaaaggtagcta |
5414891 |
T |
|
| Q |
301 |
tgcctatgaatgaaa |
315 |
Q |
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|||| |||||||||| |
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| T |
5414892 |
tgccaatgaatgaaa |
5414906 |
T |
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