View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20121_high_3 (Length: 390)
Name: NF20121_high_3
Description: NF20121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20121_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 3093453 - 3093618
Alignment:
| Q |
16 |
aagttatctccgaataaagctctcttccttgtgattatcaaatgaacaggatttgtggctgtcacaaattgnnnnnnnnnntggcaaaaggatttaatat |
115 |
Q |
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| T |
3093453 |
aagttatctccaaataaagctctcttccttgtgattatcaaatgaacaggatttgtggctgtcacaaattgaaaaaaaaa-tggcaaaaggatttaatat |
3093551 |
T |
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| Q |
116 |
tgatgcatctaatcaaataccgaaaggattttggatttatcttgattaaggtg--tggatgtaaagg |
180 |
Q |
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| T |
3093552 |
tgatgcatctaatcaaataccgaaaggattttggatttatcttgattaaggtgtttggatgtaaagg |
3093618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 207 - 328
Target Start/End: Original strand, 3093643 - 3093765
Alignment:
| Q |
207 |
aataaagccttttaatgattatcaaaagaaaaaggttgatattcactttatctatctatcctatgtataaataaatgaaatatgaattttgggatga-tt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3093643 |
aataaagccttttaatgattatcaaaagaaaaaggttgatattcactttatctatctatcctatgtataaataaatgaaatatgaattttgggatgattt |
3093742 |
T |
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| Q |
306 |
ttttattattcaccaacgttcag |
328 |
Q |
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| T |
3093743 |
ttttattattcaccaaccttcag |
3093765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 3099334 - 3099379
Alignment:
| Q |
40 |
ttccttgtgattatcaaatgaacaggatttgtggctgtcacaaatt |
85 |
Q |
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| T |
3099334 |
ttccttgtgattgtcaaatgaacaggatgtgttgctgtaacaaatt |
3099379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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