View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20121_high_4 (Length: 311)
Name: NF20121_high_4
Description: NF20121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20121_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 36001651 - 36001579
Alignment:
| Q |
157 |
agcattgtgccaaggtattcatgtagtttatcctgcaacatacataaaatattactcatcaacaacagaaaaaga |
231 |
Q |
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| T |
36001651 |
agcattgtcccaaggtattcatgtagtttatcctgcaac--acacaaaatattactcatcaacaacagaaaaaga |
36001579 |
T |
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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 311
Target Start/End: Complemental strand, 36014921 - 36014828
Alignment:
| Q |
213 |
catcaacaacagaaaaagagagttagggattattatactcggagcgctattacataattttcatattgcatttatataaatggttaaaagttctatcat |
311 |
Q |
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| T |
36014921 |
catcaacaacagaaaaagaaagttagggat----atgctcggag-gctattacataattttcatactacatttatctaaatggtaaacagttctatcat |
36014828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 36012854 - 36012768
Alignment:
| Q |
209 |
tactcatcaacaacagaaaaagagagttagggattattatactcggagcgctattacataattttcatattgcatttatataaatggttaa |
299 |
Q |
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| T |
36012854 |
tactcatcaacaacagaaagagaaagttaaggattat---actcggag-gctattacctaattttcatactacatttatataaatggttaa |
36012768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 36015580 - 36015546
Alignment:
| Q |
166 |
ccaaggtattcatgtagtttatcctgcaacataca |
200 |
Q |
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| T |
36015580 |
ccaaggtattcatgtagtttatcctgcaacataca |
36015546 |
T |
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