View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20121_low_1 (Length: 495)
Name: NF20121_low_1
Description: NF20121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20121_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 42 - 425
Target Start/End: Original strand, 1241766 - 1242143
Alignment:
| Q |
42 |
cctattatatctatggagcagttgttgtaaaaaccactgcaatttactcagtttgctacattgcaagactttactgtagcctctccccgcttcaaaaacc |
141 |
Q |
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| T |
1241766 |
cctattttatctatggagcagttgttgtaaaaaccactgcaatttactcagtttgctacattgcaagactttactgtagcctctccccgcttcaaaaacc |
1241865 |
T |
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| Q |
142 |
accggatctgcatattctctcatcacaagatatatatcttattcagctgcaagcaacttcgtcttctgctcagtaattagaaaaattaggaacattccaa |
241 |
Q |
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| T |
1241866 |
accggatctgcatattctctcatcacaagatat----cttattcagctgcaagcaacttcgtattctgctcagtaattagaaaaattaggaacattccaa |
1241961 |
T |
|
| Q |
242 |
tcattgccttccaatcattaccaacaattcctttttctattagataccagatcatgtgcgttggaaaggattttgttgtgtctagtgtgtccacaaaagg |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
1241962 |
tcattgccttccaatcattaccaacaattcctttttctattagataccagatcatgtgcgttggagaggattttgttgtgtcta--gtgtccacaaaagg |
1242059 |
T |
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| Q |
342 |
tttaaaatatgtgatttcttgaagttgaagtttcagatgaaaccaatggccaaggaaaaatgtaaaaagacatgaaacataaat |
425 |
Q |
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| T |
1242060 |
tttaaaatatgtgatttcttgaagttgaagtttcagatgaaaccaatggccaaggaaaaatgtaaaaagacatgaaacataaat |
1242143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 482
Target Start/End: Original strand, 1242140 - 1242171
Alignment:
| Q |
451 |
aaatgtgagaaagcatgccataaatttcatga |
482 |
Q |
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| T |
1242140 |
aaatgtgagaaagcatgccataaatttcatga |
1242171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 61 - 437
Target Start/End: Original strand, 472331 - 472715
Alignment:
| Q |
61 |
agttgttgtaaaaaccactgcaatttactcagtttgctacattgcaagactttactgtagcctctccccgcttcaaaaaccaccggatctgcatattctc |
160 |
Q |
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| T |
472331 |
agttgttgtaaaaaccaccgcaatttactcagtttgctacattgcaatactttacagtagcctctccccgcttcaaaaaccaccggatctgcatattctc |
472430 |
T |
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| Q |
161 |
tcatcacaagatatatatcttattcagctgcaagcaacttcgtcttctgctcagtaattagaaaaattaggaacattccaatcattgcct----tccaat |
256 |
Q |
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| T |
472431 |
tcatcacaag----atatcttattcagctgcaagcaacttctccttctgctcagtaattagaaaaattaggaacattccaatcattgcattttgttgaat |
472526 |
T |
|
| Q |
257 |
cat---------taccaacaattcctttttc--tattagataccagatcatgtgcgttggaaaggattttgttgtgtctagtgtgtccacaaaaggttta |
345 |
Q |
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| T |
472527 |
agtattactacataccaacaattcctttttctatattagatatcaga-aatgttagttggagaggattttgttgtgtcta--gtgtccacaaaaggttta |
472623 |
T |
|
| Q |
346 |
aaatatgtgatttcttgaagttgaagtttcagatgaaaccaatggccaaggaaaaatgtaaaaagacatgaaacataaataactgtatagaa |
437 |
Q |
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|||| | |||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
472624 |
aaatctatgatttcttgaagttgaagtttcacatgaaacccatggctaaggaaaaatgtaaaaagacatgaaaaataaataaccgtatagaa |
472715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 61 - 248
Target Start/End: Complemental strand, 41526926 - 41526736
Alignment:
| Q |
61 |
agttgttgtaaaaaccactgcaatttactcagtttgctac---attgcaagactttactgtagcctctccccgcttcaaaaaccaccggatctgcatatt |
157 |
Q |
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| T |
41526926 |
agttgttgtaaaaaccactgcaatttactcagtttgctactacattgcaatactttactgtagcctctccccgcttcaaaaaccacctgatctgcatatt |
41526827 |
T |
|
| Q |
158 |
ctctcatcacaagatatatatcttattcagc----tgcaagcaacttcgtcttctgctcagtaattagaaaaattaggaacattccaatcattgc |
248 |
Q |
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| T |
41526826 |
ctctcatcataag----atatcttattcagctgcatgcaagcaacttctccttctgctcagtaattagaaaaattaggaacattccaatcattgc |
41526736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 301 - 454
Target Start/End: Complemental strand, 41522034 - 41521883
Alignment:
| Q |
301 |
gttggaaaggattttgttgtgtctagtgtgtccacaaaaggtttaaaatatgtgatttcttgaagttgaagtttcagatgaaaccaatggccaaggaaaa |
400 |
Q |
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| T |
41522034 |
gttggagaggattttgttgtgtctagtgt--ccacaaaaggtttaaaatctatgatttcttgaagttgaagtttcacatgaaacccatggctaaggaaaa |
41521937 |
T |
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| Q |
401 |
atgtaaaaagacatgaaacataaataactgtatagaacctagtactattgaaat |
454 |
Q |
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| T |
41521936 |
atgtcaaaagacatgaaaaataaataaccgtatagaaccaagtaccattgaaat |
41521883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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