View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20121_low_5 (Length: 253)
Name: NF20121_low_5
Description: NF20121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20121_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 25508400 - 25508599
Alignment:
| Q |
40 |
attctcaagttaactcataatatctacagtttatgagtcttacgtctcaaaatagagtaaacttgatttcgcaaaggattgaacgagtcctacgtcacaa |
139 |
Q |
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| T |
25508400 |
attctcaagttaactcataatatctacagtttatgagtcttacgtctcaaaatcgagtaaacttgatttcacaaaggattgaacgagtcctacgtcacaa |
25508499 |
T |
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| Q |
140 |
aatgacaatggttcaatgttcttataaaactcataaggcaacaattggatgtgataaggcttagtagtacacaaacattaatctgtgttatagccctatg |
239 |
Q |
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| T |
25508500 |
aatgacaatggttcaatgtttttataaaactcaaaaggcaacaattggatgtgataaggcttagtagtacacaaacattaatctgtgttatagccctatg |
25508599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 119 - 239
Target Start/End: Complemental strand, 25556614 - 25556494
Alignment:
| Q |
119 |
tgaacgagtcctacgtcacaaaatgacaatggttcaatgttcttataaaactcataaggcaacaattggatgtgataaggcttagtagtacacaaacatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25556614 |
tgaacgagtcctacgtcacaaaatgacaatggttcaatgtttttataaaactcaaaaggcaacaattggatgtgataaggcttagtagtacacaaacatt |
25556515 |
T |
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| Q |
219 |
aatctgtgttatagccctatg |
239 |
Q |
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| T |
25556514 |
aatctgtgttatagccctatg |
25556494 |
T |
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