View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20122_high_12 (Length: 252)
Name: NF20122_high_12
Description: NF20122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20122_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 21354476 - 21354251
Alignment:
| Q |
18 |
tttacattttcattttcagtcacttggttgaagttaaccgggatacatcgcgattatgctacgatggtcggcgtacatgttctcaaggtgattcctcaac |
117 |
Q |
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| T |
21354476 |
tttacattttcattttcagtcacttagttgaagttaaccgggatagatcgcgattgtgctgcgatggtcggtgcacatgttctcaaggtgattcctcaac |
21354377 |
T |
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| Q |
118 |
ta---gcagtggctctgttgtatacacaacaacaactgcatgcttctgcttcttctgatgagaatatgcaaagtgaaagcacgaaaatttgctctcattt |
214 |
Q |
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| T |
21354376 |
taacagcagtggctctgttgtatgcacaacaacaactgcatgcttctgcttcttctgatgagaatatggaaagtgaaagcacgaaaatttgctctcattt |
21354277 |
T |
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| Q |
215 |
tcagtatggatgtttgtttatgtgat |
240 |
Q |
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| T |
21354276 |
tcagtatggatgtttgtttatgtgat |
21354251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 240
Target Start/End: Complemental strand, 21174494 - 21174333
Alignment:
| Q |
81 |
atggtcggcgtacatgttctcaaggtgattcctcaactagcag---tggctctgttgtatacacaacaacaactgcatgcttctgcttcttctgatgaga |
177 |
Q |
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| T |
21174494 |
atggtcagtgtacatgttctaaaggtgattcattaactaacaacaatggctatgttgtatgcacaacaatagcttcatgcttctgcttcttctcatgaga |
21174395 |
T |
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| Q |
178 |
atatgcaaagtgaaagcacgaaaatttgctctcattttcagtatggatgtttgtttatgtgat |
240 |
Q |
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| T |
21174394 |
atatggacagtgaaagaaagaaaa-ttgctctcgctttcaatatggatgtttgtttatgtgat |
21174333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 44728251 - 44728147
Alignment:
| Q |
119 |
agcagtggctctgttgtatacacaacaacaactgcatgcttctgcttcttctgatgagaatatgcaaagtgaaagcacgaaaatttgctctcattttcag |
218 |
Q |
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|||||||||| || | ||| |||| ||||||||||||||||||||||||||| | ||| ||||| | | |||||||| ||||| ||||||| ||||||| |
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| T |
44728251 |
agcagtggctttgctttatgcacatcaacaactgcatgcttctgcttcttctcacgaggatatggacaatgaaagcaagaaaa-ttgctctgattttcaa |
44728153 |
T |
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| Q |
219 |
tatgga |
224 |
Q |
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|||||| |
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| T |
44728152 |
tatgga |
44728147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 42927258 - 42927206
Alignment:
| Q |
118 |
tagcagtggctctgttgtatacacaacaacaactgcatgcttctgcttcttct |
170 |
Q |
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| T |
42927258 |
tagcagtggctttgttttatgcacaacaacaactgcagacttctgcttcttct |
42927206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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