View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20122_high_17 (Length: 217)
Name: NF20122_high_17
Description: NF20122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20122_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 38013057 - 38013233
Alignment:
| Q |
19 |
gacaaattaaggcattgtattccacaccctaaaactaccatatatgcctatatatacgtatgccaagtaagctcaatgagtagcaacaagtaattgaaac |
118 |
Q |
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| T |
38013057 |
gacaaattaaggcattgtattccacaccctaaaactaccatatctgcctatatatacgtatcccaagtaagctcaatgagtagcaacaagtaattgaaac |
38013156 |
T |
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| Q |
119 |
acatgataccatcaaccatgaacttcacctcatgcatatcccttctactcatgatcctaaccacaaatcacttcatt |
195 |
Q |
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| T |
38013157 |
acatgataccatcaaccatgaacttcacctcatgcatataccttctactcataatcctaaccacaaatcacttcatt |
38013233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 37989421 - 37989516
Alignment:
| Q |
100 |
agcaacaagtaattgaaacacatgataccatcaaccatgaacttcacctcatgcatatcccttctactcatgatcctaaccacaaatcacttcatt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
37989421 |
agcaacaagtaattgaaacacatgataccatcaaccatgaacttcacctcatgcatataccttctactcataatcctaaccacaaatcacttcatt |
37989516 |
T |
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