View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20122_high_3 (Length: 526)

Name: NF20122_high_3
Description: NF20122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20122_high_3
NF20122_high_3
[»] chr6 (4 HSPs)
chr6 (11-511)||(20473951-20474449)
chr6 (20-58)||(31204659-31204697)
chr6 (12-71)||(12325942-12326001)
chr6 (20-60)||(2344232-2344272)
[»] chr1 (9 HSPs)
chr1 (13-71)||(16216075-16216133)
chr1 (12-69)||(39779723-39779780)
chr1 (173-233)||(39779578-39779637)
chr1 (13-69)||(16870620-16870676)
chr1 (20-71)||(43804758-43804809)
chr1 (17-71)||(92471-92525)
chr1 (170-240)||(47682952-47683021)
chr1 (20-71)||(38143804-38143855)
chr1 (12-67)||(47683089-47683144)
[»] chr2 (4 HSPs)
chr2 (12-68)||(28549199-28549255)
chr2 (201-240)||(17131663-17131702)
chr2 (180-235)||(28549333-28549388)
chr2 (13-71)||(41890631-41890689)
[»] scaffold0204 (1 HSPs)
scaffold0204 (17-71)||(24285-24339)
[»] chr4 (7 HSPs)
chr4 (17-71)||(25275723-25275777)
chr4 (17-71)||(48336763-48336817)
chr4 (17-71)||(53218897-53218951)
chr4 (169-221)||(2431988-2432038)
chr4 (17-46)||(8111731-8111760)
chr4 (30-71)||(37148893-37148934)
chr4 (11-51)||(2432149-2432189)
[»] chr3 (2 HSPs)
chr3 (13-71)||(46068583-46068641)
chr3 (17-71)||(50090152-50090206)
[»] scaffold0064 (1 HSPs)
scaffold0064 (12-59)||(19759-19806)
[»] chr5 (4 HSPs)
chr5 (11-60)||(25974685-25974734)
chr5 (20-60)||(15679100-15679140)
chr5 (19-70)||(17028445-17028494)
chr5 (17-45)||(29834895-29834923)
[»] chr8 (4 HSPs)
chr8 (24-60)||(4806042-4806078)
chr8 (17-60)||(1151062-1151105)
chr8 (19-60)||(13318865-13318906)
chr8 (11-71)||(7380553-7380613)
[»] chr7 (4 HSPs)
chr7 (20-71)||(25183604-25183655)
chr7 (20-71)||(46982020-46982071)
chr7 (403-477)||(8166925-8166999)
chr7 (10-55)||(3624535-3624580)


Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 511
Target Start/End: Original strand, 20473951 - 20474449
Alignment:
Q  11 aaaaatatcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcatnnnnnnnnctcttttttattgtattaatttccagtttac 110  Q
    ||||| || ||||||||||||||||||||||||||||||||||| |||||  |||||||||        ||||| || ||||||||||||||||||| ||    
T  20473951 aaaaaaattattcaaaatttcatctcaaatgcatttgcacatttaattttataaaattcataaaaaaaactcttctt-attgtattaatttccagttcac 20474049  T
Q  111 aggagcaatctcttatttgaagagggcaccataatttcnnnnnnngaaggaaaaaagaggacaatatttaaaatatcaaatacttcaacaaatataacac 210  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  20474050 aggagcaatctcttatttgaagagggcaccataatttcttttttt-aaggaaaaaagaggacaatatttaaaatatcaaatacttaaacaaatataacag 20474148  T
Q  211 aaacattagttggggcaattgcccccaatcaaatttgagtgaatctatgagagttcgagtcttgtnnnnnnnnntgtttgcataataattaacatactaa 310  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||| || |||||| |||| |         ||||  ||||||||||||||||||||    
T  20474149 aaacattagttggggcaattacccccaatcaaatttgagtggatctataagggttcgaatcttataaaaaaaagtgttgacataataattaacatactaa 20474248  T
Q  311 cattttgtcaattaaaaaatattttcacaattaaacaaagcggaggtggtatataagattaagcagatgttctaatcttaatttgtttacatggaaggta 410  Q
    ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  20474249 cattttgtcaattaaaatatatttttacaattaaacaaagtggaggtggtatataagattaagcagatgttgtaatcttgatttgtttacatggaaggta 20474348  T
Q  411 gaaacaataaactaattttcttaaattgatggattaatctactcacatgtcttcaatgtatttgattcgatctgatcctcgtcctcatcctcgtcctgag 510  Q
    |||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20474349 gaaacaataatctaattttctcaaattgatggattaatatactcacatgtcttcaatgtatttgattcgatctgatcctcgtcctcgtcctcgtcctgag 20474448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 31204697 - 31204659
Alignment:
Q  20 attcaaaatttcatctcaaatgcatttgcacatttgatt 58  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  31204697 attcaaaatatcatctcaaatgcatttgcacatttgatt 31204659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 12326001 - 12325942
Alignment:
Q  12 aaaatatcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    |||| |||||||||||||| ||||| |||||||||| || ||||||| || |||||||||    
T  12326001 aaaaaatcattcaaaatttaatctcgaatgcatttggacgtttgattatgtaaaattcat 12325942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 2344272 - 2344232
Alignment:
Q  20 attcaaaatttcatctcaaatgcatttgcacatttgatttt 60  Q
    |||||||||||||| |||||||||||| |||| ||||||||    
T  2344272 attcaaaatttcatatcaaatgcatttacacacttgatttt 2344232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 16216075 - 16216133
Alignment:
Q  13 aaatatcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||  |||||||||    
T  16216075 aaatatcattcaaaatttcatctcaaatgcaattacacatttgattttataaaattcat 16216133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 39779780 - 39779723
Alignment:
Q  12 aaaatatcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattc 69  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  39779780 aaaaaatcattcaaaatttcatctcaaatgcatttgtacatttgattttttaaaattc 39779723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 39779637 - 39779578
Alignment:
Q  173 aatatttaaaatatcaaatacttcaacaaatataacacaaacattagttggggcaattgcc 233  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  39779637 aataattaaactatcaaatacttcaacaaatataaca-aaacattagtgggggcaattgcc 39779578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 16870676 - 16870620
Alignment:
Q  13 aaatatcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattc 69  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||||  |||||||    
T  16870676 aaatatcatttagaatttcatctcaaatgcatttacacatttgattttataaaattc 16870620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 43804758 - 43804809
Alignment:
Q  20 attcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    |||||||||||||||||||||||||||  ||||||||||||  |||||||||    
T  43804758 attcaaaatttcatctcaaatgcatttatacatttgattttataaaattcat 43804809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 92471 - 92525
Alignment:
Q  17 atcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    |||||||||||||| |||||||||| ||||||| |||||||| || |||||||||    
T  92471 atcattcaaaattttatctcaaatgtatttgcatatttgattatgtaaaattcat 92525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 47683021 - 47682952
Alignment:
Q  170 gacaatatttaaaatatcaaatacttcaacaaatataacacaaacattagttggggcaattgcccccaatc 240  Q
    ||||||| ||||||||||||| | ||||||| ||||||||| ||||| ||| ||| |||||||||||||||    
T  47683021 gacaataattaaaatatcaaacatttcaacatatataacac-aacatcagtggggccaattgcccccaatc 47682952  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 38143855 - 38143804
Alignment:
Q  20 attcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    |||||||||||||  |||||||||||| |||||||||||||  |||||||||    
T  38143855 attcaaaatttcacatcaaatgcatttacacatttgattttataaaattcat 38143804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 47683144 - 47683089
Alignment:
Q  12 aaaatatcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaat 67  Q
    |||| ||||||||||| |||||||||| | ||||||||||||||||| || |||||    
T  47683144 aaaaaatcattcaaaaattcatctcaagtacatttgcacatttgattatgtaaaat 47683089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 28549199 - 28549255
Alignment:
Q  12 aaaatatcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaatt 68  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  28549199 aaaaaatcattcaaaatttcatctcaaatacatttgcatatttgattttgtaaaatt 28549255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 17131702 - 17131663
Alignment:
Q  201 aatataacacaaacattagttggggcaattgcccccaatc 240  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  17131702 aataaaacacaaacattagtttgggcaattgcccccaatc 17131663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 28549333 - 28549388
Alignment:
Q  180 aaaatatcaaatacttcaacaaatataacacaaacattagttggggcaattgcccc 235  Q
    |||||||| |||| |||| ||| ||||| |||||||||||| ||||||||||||||    
T  28549333 aaaatatcgaatatttcaccaagtataatacaaacattagtgggggcaattgcccc 28549388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 41890689 - 41890631
Alignment:
Q  13 aaatatcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    |||| ||||| ||||||| ||||||||||||||| |||| ||||||||  |||||||||    
T  41890689 aaatgtcatttaaaattttatctcaaatgcatttacacaattgattttataaaattcat 41890631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 24339 - 24285
Alignment:
Q  17 atcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    |||||| ||||||||||||||||||||||| |||||||||| ||| |||||||||    
T  24339 atcatttaaaatttcatctcaaatgcatttacacatttgatgttgtaaaattcat 24285  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 25275723 - 25275777
Alignment:
Q  17 atcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    ||||||||||||||||| |||||||||||| |||||||||||||  |||||||||    
T  25275723 atcattcaaaatttcatatcaaatgcatttacacatttgattttataaaattcat 25275777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 48336817 - 48336763
Alignment:
Q  17 atcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    |||||| ||||||||||||||||||||||| |||||||||| ||| |||||||||    
T  48336817 atcatttaaaatttcatctcaaatgcatttacacatttgatgttgtaaaattcat 48336763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 53218897 - 53218951
Alignment:
Q  17 atcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  |||||||||    
T  53218897 atcatttaaaatttcatctcaaatgcatttacacatttgattttataaaattcat 53218951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 2432038 - 2431988
Alignment:
Q  169 ggacaatatttaaaatatcaaatacttcaacaaatataacacaaacattagtt 221  Q
    |||||||| |||||||||||||  |||||||||||| ||||||||||||||||    
T  2432038 ggacaataattaaaatatcaaa--cttcaacaaataaaacacaaacattagtt 2431988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 8111760 - 8111731
Alignment:
Q  17 atcattcaaaatttcatctcaaatgcattt 46  Q
    ||||||||||||||||||||||||||||||    
T  8111760 atcattcaaaatttcatctcaaatgcattt 8111731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 37148934 - 37148893
Alignment:
Q  30 tcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    |||| |||||||||||||||||||||||| || |||||||||    
T  37148934 tcatttcaaatgcatttgcacatttgattatgtaaaattcat 37148893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 2432189 - 2432149
Alignment:
Q  11 aaaaatatcattcaaaatttcatctcaaatgcatttgcaca 51  Q
    ||||| |||||||||||||| ||||||||||||||| ||||    
T  2432189 aaaaaaatcattcaaaattttatctcaaatgcatttacaca 2432149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 46068641 - 46068583
Alignment:
Q  13 aaatatcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    |||||||||| |||||||||||||| |||||||| |||||||||||||  |||||||||    
T  46068641 aaatatcatttaaaatttcatctcatatgcatttacacatttgattttataaaattcat 46068583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 50090206 - 50090152
Alignment:
Q  17 atcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    |||||||||| ||||||||||||||||||| |||||||||||||  |||||||||    
T  50090206 atcattcaaattttcatctcaaatgcatttacacatttgattttataaaattcat 50090152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 19759 - 19806
Alignment:
Q  12 aaaatatcattcaaaatttcatctcaaatgcatttgcacatttgattt 59  Q
    |||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  19759 aaaaaatcattgaaaatttcatctcaaatgcttttgcacatttgattt 19806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 25974685 - 25974734
Alignment:
Q  11 aaaaatatcattcaaaatttcatctcaaatgcatttgcacatttgatttt 60  Q
    ||||| |||||||||||||| ||||||||||||||| || ||||||||||    
T  25974685 aaaaaaatcattcaaaattttatctcaaatgcatttacatatttgatttt 25974734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 15679100 - 15679140
Alignment:
Q  20 attcaaaatttcatctcaaatgcatttgcacatttgatttt 60  Q
    ||||||||||||||| ||||| ||||| |||||||||||||    
T  15679100 attcaaaatttcatcacaaatacatttacacatttgatttt 15679140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 17028445 - 17028494
Alignment:
Q  19 cattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattca 70  Q
    ||||||||||||||||||| ||  ||||||||||||||||||  ||||||||    
T  17028445 cattcaaaatttcatctcatat--atttgcacatttgattttataaaattca 17028494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 29834923 - 29834895
Alignment:
Q  17 atcattcaaaatttcatctcaaatgcatt 45  Q
    |||||||||||||||||||||||||||||    
T  29834923 atcattcaaaatttcatctcaaatgcatt 29834895  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 4806042 - 4806078
Alignment:
Q  24 aaaatttcatctcaaatgcatttgcacatttgatttt 60  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4806042 aaaatttcatctcaaatgcatttacacatttgatttt 4806078  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 1151105 - 1151062
Alignment:
Q  17 atcattcaaaatttcatctcaaatgcatttgcacatttgatttt 60  Q
    |||||| ||||||| ||||||||||||||| |||||||||||||    
T  1151105 atcatttaaaattttatctcaaatgcatttacacatttgatttt 1151062  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 13318906 - 13318865
Alignment:
Q  19 cattcaaaatttcatctcaaatgcatttgcacatttgatttt 60  Q
    |||| ||||||| ||||||||||||||| |||||||||||||    
T  13318906 catttaaaattttatctcaaatgcatttacacatttgatttt 13318865  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 7380613 - 7380553
Alignment:
Q  11 aaaaatatcattcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    ||||| |||||||||||||||||||||| | ||||| || |||||||| |  |||||||||    
T  7380613 aaaaaaatcattcaaaatttcatctcaattacatttacatatttgattctataaaattcat 7380553  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 25183604 - 25183655
Alignment:
Q  20 attcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    ||||||||||||||||||||||||||| ||||||  |||||  |||||||||    
T  25183604 attcaaaatttcatctcaaatgcatttacacattgaattttataaaattcat 25183655  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 46982020 - 46982071
Alignment:
Q  20 attcaaaatttcatctcaaatgcatttgcacatttgattttgcaaaattcat 71  Q
    |||||||||||||| |||||||||||| | |||||||||||  |||||||||    
T  46982020 attcaaaatttcatttcaaatgcatttactcatttgattttataaaattcat 46982071  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 477
Target Start/End: Complemental strand, 8166999 - 8166925
Alignment:
Q  403 ggaaggtagaaacaataaactaattttcttaaattgatggattaatctactcacatgtcttcaatgtatttgatt 477  Q
    ||||||| ||||||| || |||| ||||| |||||| ||||||| |  |||| ||||||||||||||| ||||||    
T  8166999 ggaaggtggaaacaaaaatctaactttctcaaattggtggattagttcactcgcatgtcttcaatgtaattgatt 8166925  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 3624535 - 3624580
Alignment:
Q  10 gaaaaatatcattcaaaatttcatctcaaatgcatttgcacatttg 55  Q
    |||||| | ||||||||||||||||| ||||||||||| |||||||    
T  3624535 gaaaaaaagcattcaaaatttcatctgaaatgcatttgtacatttg 3624580  T

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