View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20122_high_4 (Length: 513)
Name: NF20122_high_4
Description: NF20122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20122_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 229 - 501
Target Start/End: Complemental strand, 35755210 - 35754924
Alignment:
| Q |
229 |
tggacaaggtaaatgtagatcaaatgctttgtgctgcaagcaagcaagcaaagactctataaagctgctgaaaggcctgttttgtgaaagtagttgagga |
328 |
Q |
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| T |
35755210 |
tggacaaggtaaatgtagatcaaatgctttgtgctgcaagcaagcaagcaaagactctataaagctgctgaaaggcctgttttgtgaaagtagttgagga |
35755111 |
T |
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| Q |
329 |
tataagttttgttaacttggttaga--------------attacatcatataagaagaattatgtatttttcatttttgttacagtcatcaagatgactt |
414 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35755110 |
tataagttttgttaacttggttggtgttatatatgtgatattacatcatataagaagaattatgtatttttcagttttgttacagtcatcaagatgactt |
35755011 |
T |
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| Q |
415 |
tatggttcatggtgtttgtaatttaagaattatacctacagtaatgaaatgagaggtataattcttgtaactttgatgtcctttgct |
501 |
Q |
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| T |
35755010 |
tatggttcatggtgtttgtaatttaagaattatacctacagtaatgaaatgagaggtataattcttgtaactttgatgacctttgct |
35754924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 35755426 - 35755259
Alignment:
| Q |
13 |
cagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaagga |
112 |
Q |
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| T |
35755426 |
cagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaaatggtgggagtgggaattggggaacatgggatggatatagcagaagga |
35755327 |
T |
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| Q |
113 |
gagaaaacaacatgtcatggtctaagagccctgaaaatcattatggcaataatgagtatcagatgaat |
180 |
Q |
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| T |
35755326 |
gagaaaacaacatgtcatggtctaagagccctgaaaatcattatggcaataatgagtatcagatgaat |
35755259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 35766052 - 35765891
Alignment:
| Q |
13 |
cagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaagga |
112 |
Q |
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|||||||||| || |||||| |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35766052 |
cagagggagcgctttggtggcaacttgcataacaagtatcaa---ggaagaaatggtgggagtgggaattggggaacatgggatggatataacagaagga |
35765956 |
T |
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| Q |
113 |
gagaaaacaacatgtcatggtctaagagccctgaaaatcattatggcaataatgagtatcagatgaat |
180 |
Q |
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| T |
35765955 |
gag---acaacatgtcatggtctaagaaccctggatatcatcatggcactagtgactatcagatgaat |
35765891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 35799005 - 35798847
Alignment:
| Q |
13 |
cagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaagga |
112 |
Q |
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| T |
35799005 |
cagagggagcgatatggtggtgactttcataacaagtatcaa---ggaagaaat------agtggaaattggggaacatgggatggatataacagaaaga |
35798915 |
T |
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| Q |
113 |
gagaaaacaacatgtcatggtctaagagccctgaaaatcattatggcaataatgagtatcagatgaat |
180 |
Q |
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| T |
35798914 |
aagaaaacaacatgtcttggtctaagaaccctggatatcatcatggcactaatgagtatcagatgaat |
35798847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 35789377 - 35789219
Alignment:
| Q |
13 |
cagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaagga |
112 |
Q |
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||||||||||| |||||||||||||| ||||||||||| ||| ||||||| | ||||| |||||||| |||||||||||||||| |||||||| |
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| T |
35789377 |
cagagggagcaatatggtggtgactttcataacaagtatcaa---ggaagaaat------agtggaaattgggggacatgggatggatataacagaagga |
35789287 |
T |
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| Q |
113 |
gagaaaacaacatgtcatggtctaagagccctgaaaatcattatggcaataatgagtatcagatgaat |
180 |
Q |
| |
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||||||||||||| |||||||||| || ||||| | || || |||| | ||||||||||||||||||| |
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| T |
35789286 |
gagaaaacaacatatcatggtctacgaaccctggatatgatcatggaactaatgagtatcagatgaat |
35789219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 35760572 - 35760411
Alignment:
| Q |
13 |
cagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaagga |
112 |
Q |
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|||| |||||| ||||||| |||||||||||||||||| ||| ||||||| ||| ||| ||| ||||||||| ||||||||||||||| ||||| || |
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| T |
35760572 |
cagacggagcaatatggtgctgacttgcataacaagtatcaa---ggaagaaatggcgggcatggaaattggggagcatgggatggatataacagaaaga |
35760476 |
T |
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| Q |
113 |
gagaaaacaacatgtcatggtctaagagccctgaaaatcattatggcaataatgagtatcagatgaat |
180 |
Q |
| |
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||||| |||||||| |||||||| | ||| | | || || |||| | |||||| |||||||||||| |
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| T |
35760475 |
gagaa---aacatgtcgtggtctaataaccccggacattatcatggtactaatgaatatcagatgaat |
35760411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 35785552 - 35785423
Alignment:
| Q |
13 |
cagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaagga |
112 |
Q |
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||||||||| |||||||||| ||||||||||||| || ||| ||||||| |||| ||| | | ||||||| |||||||||||| |||| ||||| || |
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| T |
35785552 |
cagagggagaactatggtggcaacttgcataacaaatatcaa---ggaagaaatggttggaatagtaattgggcaacatgggatgggtataacagaaaga |
35785456 |
T |
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| Q |
113 |
gagaaaacaacatgtcatggtctaagagccctg |
145 |
Q |
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|||||||||| ||||| |||||| || ||||| |
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| T |
35785455 |
gagaaaacaagatgtctcggtctatgaaccctg |
35785423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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