View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20122_high_6 (Length: 295)
Name: NF20122_high_6
Description: NF20122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20122_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 4702537 - 4702400
Alignment:
| Q |
1 |
tggtatataatgtaacacatattataatattcaatttaactttgattaatttgctctaacaaatcaaatgagagtataaggagtcactgcgggaaagaaa |
100 |
Q |
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| T |
4702537 |
tggtatataatgtaacacatattataatattcaatttaactttgattaatttgctctaacaaatcaaatgagagtataaggagtcactgcaggaaagaaa |
4702438 |
T |
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| Q |
101 |
taaattgtagagattatatttcaatagaacaattataa |
138 |
Q |
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| T |
4702437 |
taaattgtagagattatatttcaatagaacaattataa |
4702400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 275
Target Start/End: Complemental strand, 4702390 - 4702357
Alignment:
| Q |
242 |
ttcttaaccattcaatttattcggaagttccagc |
275 |
Q |
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| T |
4702390 |
ttcttaaccattcaatttattcggaagttccagc |
4702357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 4705709 - 4705677
Alignment:
| Q |
145 |
gactaaaataattatgaaaaaagttccaatatt |
177 |
Q |
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| T |
4705709 |
gactaaaataattatggaaaaagttccaatatt |
4705677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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