View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20122_low_1 (Length: 658)

Name: NF20122_low_1
Description: NF20122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20122_low_1
NF20122_low_1
[»] chr4 (10 HSPs)
chr4 (16-642)||(53488122-53488746)
chr4 (530-643)||(53495394-53495507)
chr4 (524-643)||(53499300-53499419)
chr4 (543-643)||(53493008-53493108)
chr4 (567-643)||(53502422-53502498)
chr4 (339-423)||(53493228-53493312)
chr4 (376-411)||(53495584-53495619)
chr4 (381-419)||(52591272-52591310)
chr4 (545-641)||(52591047-52591143)
chr4 (380-420)||(53502660-53502700)
[»] chr7 (4 HSPs)
chr7 (530-643)||(37188934-37189047)
chr7 (568-620)||(32709833-32709885)
chr7 (568-620)||(32715055-32715107)
chr7 (338-446)||(37189131-37189239)
[»] chr3 (2 HSPs)
chr3 (568-643)||(38214059-38214134)
chr3 (568-643)||(38218278-38218353)
[»] chr8 (3 HSPs)
chr8 (568-639)||(42991375-42991446)
chr8 (568-643)||(35018059-35018134)
chr8 (566-628)||(33811087-33811149)
[»] chr2 (3 HSPs)
chr2 (567-632)||(16942678-16942743)
chr2 (567-632)||(17013343-17013408)
chr2 (567-620)||(37638856-37638909)
[»] chr1 (1 HSPs)
chr1 (566-628)||(47495928-47495990)
[»] chr6 (3 HSPs)
chr6 (568-620)||(10379776-10379828)
chr6 (568-620)||(10411402-10411454)
chr6 (567-626)||(33450450-33450509)


Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 16 - 642
Target Start/End: Original strand, 53488122 - 53488746
Alignment:
Q  16 aatactttacatgcagagatttcaaggagtttaatagtaattgaaatagcttatcaccattattggcacaatttgtggatagaaaccgattcaactttgg 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  53488122 aatactttacatgcagagatttcaaggagtttaatagtgattgaaatagcttatcaccatcattggcacaatt-gtggatagaaaccgattcaactttgg 53488220  T
Q  116 tggtgcatgcttttaagaatgctgctaaaattccttggttttactaatttgagtagttgttaaaatgcttccaatatttttgaacataataataactcaa 215  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53488221 tgatgcatgcttttaagaatgctgctaaaattccttggttttattaatttgagtagttgttaaaatgcttccaatatttttgaacataataataactcaa 53488320  T
Q  216 atgacatagcttaaagaatgatggcaatcgaaagatggttnnnnnnnngtgcacacatatgttacaagtaataaactattaaaagttgcactcctcttaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||         ||||||||||| ||||| ||||||||||| ||||||||| |||||||||||    
T  53488321 atgacatagcttaaagaatgatggcaatcgaaagatggttaaaaaaaa-tgcacacatattttacaggtaataaactagtaaaagttgtactcctcttaa 53488419  T
Q  316 ttcttatgagttggtacggacaatgcattctagaggaagaccctgagggaatcgtttaaggtcattgcaataattgtaaatcatgtaattcttctggacc 415  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53488420 ttcttatgagttggtacggacaatgcattccaaagggagaccctgagggaatcgtttaaggtcattgcagtaattgtaaatcatgtaattcttctggacc 53488519  T
Q  416 catttgagtcttttctgatttgtagaatccagttgttgatacaaccaagcattgtcagaagaagagttggatttgcaagaagaaattccattggacaaaa 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53488520 catttgagtcttttctgatttgtagaatccagttgttgatacaaccaagcattgtcagaagaagagttggatttgcaagaagaaattccattggacaaaa 53488619  T
Q  516 cacaaccattggctttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcagcatt 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53488620 cacaaccattggctttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcggcatt 53488719  T
Q  616 ccatagacttgaatataatctcattgg 642  Q
    |||||||||||||||||||||||||||    
T  53488720 ccatagacttgaatataatctcattgg 53488746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 530 - 643
Target Start/End: Complemental strand, 53495507 - 53495394
Alignment:
Q  530 ttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaat 629  Q
    ||||| |||||| | || ||||| |||||||| |   |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53495507 ttgaaattcctatatgatgcagtgaatggagcatttgtccaatctgtcttgacaagaccacctcttgttgcccaatcatcagcattccatagacttgaat 53495408  T
Q  630 ataatctcattggt 643  Q
    |||  |||||||||    
T  53495407 atatcctcattggt 53495394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 524 - 643
Target Start/End: Complemental strand, 53499419 - 53499300
Alignment:
Q  524 ttggctttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagac 623  Q
    ||||| |||||||| ||  |||||||||| || |||||||    ||||||||| || ||||| || ||||||||||||||||||||||||||||| ||||    
T  53499419 ttggcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagac 53499320  T
Q  624 ttgaatataatctcattggt 643  Q
    |||| ||||  |||||||||    
T  53499319 ttgagtatatcctcattggt 53499300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 543 - 643
Target Start/End: Complemental strand, 53493108 - 53493008
Alignment:
Q  543 aagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcattgg 642  Q
    |||||||||| || |||||||    ||||||||| || ||||| || ||||||||||||||||||||||||||||| |||||||| ||||  ||||||||    
T  53493108 aagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattgg 53493009  T
Q  643 t 643  Q
    |    
T  53493008 t 53493008  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 567 - 643
Target Start/End: Complemental strand, 53502498 - 53502422
Alignment:
Q  567 tccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcattggt 643  Q
    |||||||||| || || || ||||||||||||||||| | ||| |||||||| | ||||||||||| ||||||||||    
T  53502498 tccaatctgtcttgactagtccacctcttgttgcccagttatctgcattccacaaacttgaatatattctcattggt 53502422  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 423
Target Start/End: Complemental strand, 53493312 - 53493228
Alignment:
Q  339 tgcattctagaggaagaccctgagggaatcgtttaaggtcattgcaataattgtaaatcatgtaattcttctggacccatttgag 423  Q
    |||||||| |||||||||||||||| |||| |||    ||| |||| ||||| || ||||||||||||||||| ||||| |||||    
T  53493312 tgcattcttgaggaagaccctgaggaaatcttttgttatcactgcagtaattatagatcatgtaattcttctgaacccacttgag 53493228  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 411
Target Start/End: Complemental strand, 53495619 - 53495584
Alignment:
Q  376 gtcattgcaataattgtaaatcatgtaattcttctg 411  Q
    |||| |||||||||||||||||||||||||||||||    
T  53495619 gtcagtgcaataattgtaaatcatgtaattcttctg 53495584  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 419
Target Start/End: Complemental strand, 52591310 - 52591272
Alignment:
Q  381 tgcaataattgtaaatcatgtaattcttctggacccatt 419  Q
    |||||||||||||||||||||||||||| || |||||||    
T  52591310 tgcaataattgtaaatcatgtaattcttttgcacccatt 52591272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 641
Target Start/End: Complemental strand, 52591143 - 52591047
Alignment:
Q  545 gaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcattg 641  Q
    |||||||| ||||| |||||   |||||| |||||| | ||||| || ||||| ||||||| ||| |||| ||| |||||||||||||  |||||||    
T  52591143 gaagcagtgaatggggcttgggaccaatcagttttcgctagacctccccttgtggcccaattatctgcatcccaaagacttgaatatatactcattg 52591047  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 53502700 - 53502660
Alignment:
Q  380 ttgcaataattgtaaatcatgtaattcttctggacccattt 420  Q
    ||||| |||||||| ||||||||||||||||| ||||||||    
T  53502700 ttgcagtaattgtatatcatgtaattcttctgcacccattt 53502660  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 530 - 643
Target Start/End: Complemental strand, 37189047 - 37188934
Alignment:
Q  530 ttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaat 629  Q
    |||||||| ||| ||||||||||||| ||||| |    ||||||||| || ||||| ||||||||||| |||||||||||||||||||| ||||| ||||    
T  37189047 ttgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtagcccaatcatcagcattccaaagactagaat 37188948  T
Q  630 ataatctcattggt 643  Q
    | | ||||||||||    
T  37188947 agattctcattggt 37188934  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 620
Target Start/End: Complemental strand, 32709885 - 32709833
Alignment:
Q  568 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccata 620  Q
    ||||||||||||| | |  ||||||||||||||||||||||| ||||||||||    
T  32709885 ccaatctgttttctctaatccacctcttgttgcccaatcatctgcattccata 32709833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 620
Target Start/End: Complemental strand, 32715107 - 32715055
Alignment:
Q  568 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccata 620  Q
    ||||||||||||| | | |||||||||||| ||||||||||| ||||||||||    
T  32715107 ccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattccata 32715055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 446
Target Start/End: Complemental strand, 37189239 - 37189131
Alignment:
Q  338 atgcattctagaggaagaccctgagggaatcgtttaaggtcattgcaataattgtaaatcatgtaattcttctggacccatttgagtcttttctgatttg 437  Q
    ||||||||| |||||||||||||||| |||| |||    ||| |||| || ||||| ||||| ||||||||||| ||||| ||||| || |  ||| |||    
T  37189239 atgcattcttgaggaagaccctgaggaaatcttttggtatcagtgcagtagttgtagatcatataattcttctgcacccacttgagcctctcatgacttg 37189140  T
Q  438 tagaatcca 446  Q
    |||||||||    
T  37189139 tagaatcca 37189131  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 643
Target Start/End: Original strand, 38214059 - 38214134
Alignment:
Q  568 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcattggt 643  Q
    |||||| |||||||| | |||||||||||| |||||||||||||||||||| ||||||||||| | ||||||||||    
T  38214059 ccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggt 38214134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 568 - 643
Target Start/End: Original strand, 38218278 - 38218353
Alignment:
Q  568 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcattggt 643  Q
    |||||| |||||||| | |||||||||||| |||||||||||||||||||| ||||||||||| | ||||||||||    
T  38218278 ccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcattccagagacttgaatagattctcattggt 38218353  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 568 - 639
Target Start/End: Complemental strand, 42991446 - 42991375
Alignment:
Q  568 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcat 639  Q
    |||||| |||||||| | |||||||||||| |||||||| ||||| ||||| ||||||||||||| ||||||    
T  42991446 ccaatcagttttcaccaaaccacctcttgtagcccaatcttcagcgttccaaagacttgaatatattctcat 42991375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 568 - 643
Target Start/End: Complemental strand, 35018134 - 35018059
Alignment:
Q  568 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatataatctcattggt 643  Q
    |||||| |||||||| |  ||||||||||| |||||||||||||||||||| || || ||||| | ||||||||||    
T  35018134 ccaatcagttttcaccaatccacctcttgtggcccaatcatcagcattccacaggctggaatagattctcattggt 35018059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 566 - 628
Target Start/End: Original strand, 33811087 - 33811149
Alignment:
Q  566 ttccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaa 628  Q
    ||||||| ||||||  |||| ||||||||||| ||||||||||| |||||||||| |||||||    
T  33811087 ttccaatttgttttttcaagtccacctcttgtagcccaatcatctgcattccatacacttgaa 33811149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 16942743 - 16942678
Alignment:
Q  567 tccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatata 632  Q
    ||||||||||||||||||  |||||||| || ||||||| ||| |||||||| |||||||||||||    
T  16942743 tccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatata 16942678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 632
Target Start/End: Complemental strand, 17013408 - 17013343
Alignment:
Q  567 tccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaatata 632  Q
    ||||||||||||||||||  |||||||| || ||||||| ||| |||||||| |||||||||||||    
T  17013408 tccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatata 17013343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 567 - 620
Target Start/End: Complemental strand, 37638909 - 37638856
Alignment:
Q  567 tccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccata 620  Q
    ||||||||||||||||| ||||||||  ||||||||||||||| ||||||||||    
T  37638909 tccaatctgttttcacacgaccaccttgtgttgcccaatcatctgcattccata 37638856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 566 - 628
Target Start/End: Complemental strand, 47495990 - 47495928
Alignment:
Q  566 ttccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttgaa 628  Q
    ||||||| ||||||  |||| ||||||||||| ||||||||||| |||||||||| |||||||    
T  47495990 ttccaatttgttttttcaagtccacctcttgtagcccaatcatctgcattccatacacttgaa 47495928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 620
Target Start/End: Original strand, 10379776 - 10379828
Alignment:
Q  568 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccata 620  Q
    ||||||||||||| | | |||||| ||||| ||||||||||||||||||||||    
T  10379776 ccaatctgttttctctaaaccaccccttgtggcccaatcatcagcattccata 10379828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 620
Target Start/End: Complemental strand, 10411454 - 10411402
Alignment:
Q  568 ccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccata 620  Q
    ||||||||||||| | | |||||| ||||| ||||||||||||||||||||||    
T  10411454 ccaatctgttttctccaaaccaccccttgtagcccaatcatcagcattccata 10411402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 567 - 626
Target Start/End: Complemental strand, 33450509 - 33450450
Alignment:
Q  567 tccaatctgttttcacaagaccacctcttgttgcccaatcatcagcattccatagacttg 626  Q
    |||||| |||||| ||||| ||||||||||| ||||||| ||| |||||||||| |||||    
T  33450509 tccaatttgttttaacaagtccacctcttgtggcccaattatctgcattccataaacttg 33450450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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