View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20122_low_13 (Length: 286)

Name: NF20122_low_13
Description: NF20122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20122_low_13
NF20122_low_13
[»] chr7 (8 HSPs)
chr7 (14-286)||(34465347-34465622)
chr7 (176-286)||(34449258-34449368)
chr7 (189-286)||(34438384-34438481)
chr7 (34-128)||(34449142-34449236)
chr7 (208-286)||(34164036-34164114)
chr7 (208-286)||(34170533-34170611)
chr7 (208-286)||(34214132-34214210)
chr7 (36-138)||(34438231-34438333)
[»] scaffold0176 (1 HSPs)
scaffold0176 (208-286)||(30857-30935)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 34465347 - 34465622
Alignment:
Q  14 accacaagcttaaaataaagtgattttactatacaggcatcagccatagtgatgaagtcgatacaagtgttatctcaccttttgtgaaagtatattttcc 113  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34465347 accacaagcttaaaataaagtgattttgctatacaggcatcagccatagtgatgaagttgatacaagtgttatctcaccttttgtgaaagtatattttcc 34465446  T
Q  114 tactcttgattgtttcacattccatgctttctattctttcttttatttattttt---nnnnnnnntggtatattcaatttttgcatacctgaatttttag 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||           ||||| |||||||||||||||||||||||||||||    
T  34465447 tactcttgtttgtttcacattccatgctttctattctttcttttatttattttttaaaataaaaatggtacattcaatttttgcatacctgaatttttag 34465546  T
Q  211 gaagcacttgaaggtattgagtttgcaagaggttcatccacttcaaaatggggctctgttagagcatctatgggac 286  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34465547 gaagcacttgaaggtattgagtttgctagaggttcatccacttcaaaatggggctctgttagagcatctatgggac 34465622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 176 - 286
Target Start/End: Original strand, 34449258 - 34449368
Alignment:
Q  176 tggtatattcaatttttgcatacctgaatttttaggaagcacttgaaggtattgagtttgcaagaggttcatccacttcaaaatggggctctgttagagc 275  Q
    |||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||| ||  |||||||    
T  34449258 tggtatattcaattttggcatacctgaatttgtaggaagcacttgatggtattgagtttgctagaggtccatcctcttcaaaatggggatcccttagagc 34449357  T
Q  276 atctatgggac 286  Q
    |||||||||||    
T  34449358 atctatgggac 34449368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 286
Target Start/End: Original strand, 34438384 - 34438481
Alignment:
Q  189 ttttgcatacctgaatttttaggaagcacttgaaggtattgagtttgcaagaggttcatccacttcaaaatggggctctgttagagcatctatgggac 286  Q
    ||||||||| |||||||| ||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||  |  ||||||||||||||||||    
T  34438384 ttttgcataactgaatttgtaggaagcacttgatagtattgagtttgctagaggtccatccacttcaaaatggggagccattagagcatctatgggac 34438481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 34449142 - 34449236
Alignment:
Q  34 tgattttactatacaggcatcagccatagtgatgaagtcgatacaagtgttatctcaccttttgtgaaagtatattttcctactcttgattgttt 128  Q
    ||||||||||||||||||||||||||||  |||||| | |||||||  |  |||  |||||||||| ||||||||||||||||||| | ||||||    
T  34449142 tgattttactatacaggcatcagccataccgatgaaattgatacaaaagacatccaaccttttgtgcaagtatattttcctactctagtttgttt 34449236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 34164036 - 34164114
Alignment:
Q  208 taggaagcacttgaaggtattgagtttgcaagaggttcatccacttcaaaatggggctctgttagagcatctatgggac 286  Q
    |||||||| || || |||||||||||||| |||||||| ||||| ||| ||||||| ||| ||||||| || |||||||    
T  34164036 taggaagccctagatggtattgagtttgctagaggttcttccacatcacaatggggttctcttagagcttccatgggac 34164114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 34170533 - 34170611
Alignment:
Q  208 taggaagcacttgaaggtattgagtttgcaagaggttcatccacttcaaaatggggctctgttagagcatctatgggac 286  Q
    |||||||| || || |||||||||||||| |||||||| ||||| ||| ||||||| ||| ||||||| || |||||||    
T  34170533 taggaagccctagatggtattgagtttgctagaggttcttccacatcacaatggggttctcttagagcttccatgggac 34170611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 34214132 - 34214210
Alignment:
Q  208 taggaagcacttgaaggtattgagtttgcaagaggttcatccacttcaaaatggggctctgttagagcatctatgggac 286  Q
    |||||||| || || |||||||||||||| |||||||| ||||| ||| ||||||| ||| ||||||| || |||||||    
T  34214132 taggaagccctagatggtattgagtttgctagaggttcttccacatcacaatggggttctcttagagcttccatgggac 34214210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 34438231 - 34438333
Alignment:
Q  36 attttactatacaggcatcagccatagtgatgaagtcgatacaagtgttatctcaccttttgtgaaagtatattttcctactcttgattgtttcacattc 135  Q
    |||||||||||||||| ||||  | | ||||   || ||||||||||  ||||||||||||||| |||||||||||| |||||||  ||||||| ||| |    
T  34438231 attttactatacaggcctcagtgagactgatagtgttgatacaagtgccatctcaccttttgtgcaagtatattttcttactcttatttgtttcccatcc 34438330  T
Q  136 cat 138  Q
    |||    
T  34438331 cat 34438333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 30857 - 30935
Alignment:
Q  208 taggaagcacttgaaggtattgagtttgcaagaggttcatccacttcaaaatggggctctgttagagcatctatgggac 286  Q
    |||||||| || || |||||||||||||| |||||||| ||||| ||| ||||||| ||| ||||||| || |||||||    
T  30857 taggaagccctagatggtattgagtttgctagaggttcttccacatcacaatggggttctcttagagcttccatgggac 30935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University