View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20122_low_14 (Length: 271)
Name: NF20122_low_14
Description: NF20122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20122_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 36941422 - 36941656
Alignment:
| Q |
18 |
agaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagccccc |
117 |
Q |
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| T |
36941422 |
agaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagccccc |
36941521 |
T |
|
| Q |
118 |
aaacccattccacaatgtttatttcattttcttgagcattaattattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941522 |
aaacccattccacaatgtttatttcattttcttgagcattaattattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatc |
36941621 |
T |
|
| Q |
218 |
ggtttctttactggcccttcctgtggtagcacatt |
252 |
Q |
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| T |
36941622 |
ggtttctttactggcccttcctgtggtagcacatt |
36941656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 36939702 - 36939462
Alignment:
| Q |
18 |
agaccaacaatcatcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagccccc |
117 |
Q |
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|||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
36939702 |
agaccaacaatcatcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagccccc |
36939603 |
T |
|
| Q |
118 |
aaacccattccacaatgtttatttcattttcttgagcatta------attattggttttcttccacaagctatctctaaagcaacaattccaaaactata |
211 |
Q |
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| T |
36939602 |
aaacccactccacaatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactata |
36939503 |
T |
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| Q |
212 |
cacatcggtttctttactggcccttcctgtggtagcacatt |
252 |
Q |
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| T |
36939502 |
cacgtctgtttctttactagctcttcctgtggtagcacatt |
36939462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 36949775 - 36949695
Alignment:
| Q |
168 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
248 |
Q |
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||||| ||||||||||| || |||||||||| ||||||||| || ||||| | |||| |||| ||| ||||| | |||||| |
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| T |
36949775 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
36949695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 36959909 - 36959829
Alignment:
| Q |
168 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
248 |
Q |
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||||| ||||||||||| || |||||||||| ||||||||| || ||||| | |||| |||| ||| ||||| | |||||| |
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| T |
36959909 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
36959829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 3054432 - 3054491
Alignment:
| Q |
180 |
gctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcct |
239 |
Q |
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|||| ||| ||||||||||||||||||||||||| || | ||||||||| ||||||||| |
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| T |
3054432 |
gctagctccaaagcaacaattccaaaactatacatgtcagattctttactagcccttcct |
3054491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 28294221 - 28294281
Alignment:
| Q |
182 |
tatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtg |
242 |
Q |
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|||||| |||||||| || ||||||||||||||||| | |||||||| ||||| |||||| |
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| T |
28294221 |
tatctccaaagcaactatcccaaaactatacacatctgactctttacttgccctacctgtg |
28294281 |
T |
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