View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20122_low_20 (Length: 236)
Name: NF20122_low_20
Description: NF20122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20122_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34465820 - 34466040
Alignment:
| Q |
1 |
aattacatggccttctacaaagcaataaagaaattttatccagatattcaaattatttcaaattgtcctgcttttaagacaccgttaaatcacccagcgg |
100 |
Q |
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| T |
34465820 |
aattacatggccttctacaaagcaataaagaaattttatccagatattcaaattatttcaaattgtcctgcttttaagacaccgttaaatcacccggcgg |
34465919 |
T |
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| Q |
101 |
atctctatgattatcatgtaattatcatatcccttttatcctcataaaacattataaccttgataatttcattttatccagatattcaaattttacataa |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34465920 |
atctctatgattatcatgtaaatatcatatcccttttatcctcataaaacattataaccttgataatttcattttatccagatattcaaattttacataa |
34466019 |
T |
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| Q |
201 |
atttttctcatactctaaatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34466020 |
atttttctcatactctaaatt |
34466040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 34439071 - 34439201
Alignment:
| Q |
1 |
aattacatggccttctacaaagcaataaagaaattttatccagatattcaaattatttcaaattgtcctgcttttaagacaccgttaaatcacccagcgg |
100 |
Q |
| |
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|||||| |||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||| |||| | ||| ||| || |||||||||| | |
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| T |
34439071 |
aattacttggccttccacaaagcaatacggcaatcttatccagatattcaaattatttcaaattgtgatgctcatgagaagccgctagatcacccagccg |
34439170 |
T |
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| Q |
101 |
atctctatgattatcatgtaattatcatatc |
131 |
Q |
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|||| ||||| ||| | |||| |||| |||| |
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| T |
34439171 |
atctgtatgaatataaagtaaatatcctatc |
34439201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 34449873 - 34449992
Alignment:
| Q |
12 |
cttctacaaagcaataaagaaattttatccagatattcaaattatttcaaattgtcctgcttttaagacaccgttaaatcacccagcggatctctatgat |
111 |
Q |
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|||| |||||| |||| ||||| |||||||||||||| ||| |||||||||||| |||| | || ||||||| |||| ||||| ||||| |||||| |
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| T |
34449873 |
cttccacaaagaaatacggaaatattatccagatattctaatgatttcaaattgtgatgctagtcggaaaccgttagatcatccagctgatctgtatgat |
34449972 |
T |
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| Q |
112 |
tatcatgtaattatcatatc |
131 |
Q |
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|||||||||| |||| |||| |
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| T |
34449973 |
tatcatgtaaatatcctatc |
34449992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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