View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20122_low_3 (Length: 565)
Name: NF20122_low_3
Description: NF20122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20122_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 91 - 547
Target Start/End: Original strand, 43172743 - 43173202
Alignment:
| Q |
91 |
tgtgcgttggattgaaaccatttgaagaaggaaagtagggtttctggttgagagtgaagaggtttgtatgaaagaattgagattatgattgggagtgtta |
190 |
Q |
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| T |
43172743 |
tgtgcgttggattgaaaccatttgaagaaggaaagtagggtttctggttgagagtgaagaggtttgtatgaaagaattgagattatgattgggagtgtta |
43172842 |
T |
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| Q |
191 |
agtgtgggatgaattgttgaagattctgtgggttttcgtttttggttagtattgtggttattgttcgtataagttgtcgttcatttcctctgacgtctcc |
290 |
Q |
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| T |
43172843 |
agtgtgggatgaattgttgaagattctgtgggttttcgtttttggttagtattgtggttattgtacgtataagttgtcgttcttttcctctgccgtctcc |
43172942 |
T |
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| Q |
291 |
gccaccaccaccactgccgccggcgacggtgttagtgttcatcatctttctgctttgttcactgttttaggtttcggggggtttttg-ttgaagagaagg |
389 |
Q |
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| T |
43172943 |
gccaccaccaccactgccgccggcgacggtgttagtgttcatcatctttccgctttgttcactgttttaggtttcggggggtttttgcttgaagagaagg |
43173042 |
T |
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| Q |
390 |
attc------tgattttgattttttaagacataaattttaaaaatacgaaaatgtccaactctagttagaaatttactaccttgaccaaaaataacaaca |
483 |
Q |
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| T |
43173043 |
attctgattttgattttgattttttaagacataaattttaaaaatacgaaaatgtccaactctagttagaaatttactaccttgaccaaaaataacaaca |
43173142 |
T |
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| Q |
484 |
cttgatatacgtacgtacgtggcagaaagagatttttgttttgttgaagctccaccacgtacgt |
547 |
Q |
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| T |
43173143 |
cttgata----tacgtacgtggcagaaagagatttttgttttgttgaagctccaccacgtacgt |
43173202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 43172653 - 43172683
Alignment:
| Q |
1 |
aggagggatttagcgtcggagaatttgcgac |
31 |
Q |
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| T |
43172653 |
aggagggatttagcgtcggagaatttgcgac |
43172683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 97 - 346
Target Start/End: Original strand, 51297956 - 51298208
Alignment:
| Q |
97 |
ttggattgaaaccatttgaagaaggaaagtagggtttctggttgagagtgaagaggtttgtatgaaagaattgagattatgattgggagtgttaagtgtg |
196 |
Q |
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| T |
51297956 |
ttggtttggaaccatttgaagaaggaaactagggtttttggttgacagtgaagaggtttgtatgaaaggattgagattatgattgggagtgttaagtgtg |
51298055 |
T |
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| Q |
197 |
ggatgaattgttgaagattctgtgggttttcgtttttg------gttagtattgtggttattgttcgtataagttgtcgttcatttcctctgacgtctcc |
290 |
Q |
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| T |
51298056 |
gaatgaattgttgaagattctgtgggttttcgtttttggtttttgttaatactgtggttattgtttgtatcagttgttgttcttttcctccgccgtctcc |
51298155 |
T |
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| Q |
291 |
gccaccaccaccactgccgccggcgacggtgttagtgttcatcatctttctgcttt |
346 |
Q |
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| T |
51298156 |
gacaccactaccaccgccgctgg---cggtgttcgtgttcaccatgtttatgcttt |
51298208 |
T |
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