View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20122_low_4 (Length: 555)

Name: NF20122_low_4
Description: NF20122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20122_low_4
NF20122_low_4
[»] chr2 (1 HSPs)
chr2 (1-533)||(5273639-5274171)
[»] chr8 (2 HSPs)
chr8 (166-521)||(36151143-36151495)
chr8 (166-515)||(36154535-36154881)


Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 5274171 - 5273639
Alignment:
Q  1 atcccaaaaacaagagccagccacattccatccacattagaataaccagcaccagaagcttctgcaggcaagtcattattctcatcatcgtcatcctttg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5274171 atcccaaaaacaagagccagccacattccatccacatttgaataaccagcaccagaagcttctgcaggcaagtcattattctcatcatcgtcatcctttg 5274072  T
Q  101 ctgatgatgacttgcttctatcatcaggcttagctgaatctcctttagaaactggtgcaggtgcaggagctttagctggaagcacaagatcaagaggaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  5274071 ctgatgatgacttgcttctatcatcaggcttagctgaatctcctttagaaaccggtgcaggtgcaggagctttagcaggaagcacaagatcaagaggaac 5273972  T
Q  201 aagaaccttgtcaacctgatatatagctagtttgttgtctgtgtaaactgttccagtaacggttgcgttaaccgtgccagttgtcatgctgacatggcta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5273971 aagaaccttgtcaacctgatatatagctagtttgttgtctgtgtaaactgttccagtaacggttgcattaaccgtgccagttgtcatgctgacatggcta 5273872  T
Q  301 ccgccagaagttgttacattaagttgtagccttttggcgtcatcaccggcttgtgtttgaaccgggttggttaaggtgtcaaagttcgagattgagatga 400  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5273871 ccgccagaagtggttacattaagttgtagccttttggcgtcatcaccggcttgtgtttgaaccgggttggttaaggtgtcgaagttcgagattgagatga 5273772  T
Q  401 atgaggaaagtgtatggaattgtaacagttctactttgtgtctgtcactgagggaattaaggaaacctggtttgagttttgaaaaggcattgtcttctgg 500  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5273771 atgaggaaagtgtgtggaattgtaacagttctactttgtgtctgtcactgagggaattaaggaaacctggtttgagttttgaaaaggcattgtcttctgg 5273672  T
Q  501 tgcaaaaagggttaagccaccactgctagaatc 533  Q
    |||||||||||||||||||||||||||||||||    
T  5273671 tgcaaaaagggttaagccaccactgctagaatc 5273639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 166 - 521
Target Start/End: Complemental strand, 36151495 - 36151143
Alignment:
Q  166 ggagctttagctggaagcacaagatcaagaggaacaagaaccttgtcaacctgatatatagctagtttgttgtctgtgtaaactgttccagtaacggttg 265  Q
    ||||| ||||| ||||| |||||||||||||| | ||| ||||| ||||||||||| ||||| |||||| |||| || ||||| || || |||||||| |    
T  36151495 ggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgataaatagcaagtttgctgtcggtataaacagtaccggtaacggtag 36151396  T
Q  266 cgttaaccgtgccagttgtcatgctgacatggctaccgccagaagttgttacattaagttgtagccttttggcgtcatcaccggcttgtgtttgaaccgg 365  Q
    | || || |  || || | ||| || || || || || ||| |||| || || || ||||| |||||    || ||||||||||||||||||||||| ||    
T  36151395 cattgactgctccggtagccatactaacttgactgccaccataagtagtgacgttcagttgaagccta---gcatcatcaccggcttgtgtttgaacagg 36151299  T
Q  366 gttggttaaggtgtcaaagttcgagattgagatgaatgaggaaagtgtatggaattgtaacagttctactttgtgtctgtcactgagggaattaaggaaa 465  Q
    |||||||||||| || ||||| || || || | |||||| | ||| |  || || ||||| ||||| ||||| ||||| ||| ||||||| || |||||     
T  36151298 gttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgtaagagttcgactttttgtctatcagtgagggagttgaggaac 36151199  T
Q  466 cctggtttgagttttgaaaaggcattgtcttctggtgcaaaaagggttaagccacc 521  Q
    |||| ||||||||| || || |||   |||||||||||||||| |||||| |||||    
T  36151198 cctgctttgagtttggagaatgcagaatcttctggtgcaaaaatggttaacccacc 36151143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 166 - 515
Target Start/End: Complemental strand, 36154881 - 36154535
Alignment:
Q  166 ggagctttagctggaagcacaagatcaagaggaacaagaaccttgtcaacctgatatatagctagtttgttgtctgtgtaaactgttccagtaacggttg 265  Q
    ||||| ||||| ||||| |||||||||||||| | ||| ||||| ||||||||||| ||||| |||||| |||| || ||||| || || |||||||| |    
T  36154881 ggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgataaatagcaagtttgctgtcggtataaacagtaccggtaacggtag 36154782  T
Q  266 cgttaaccgtgccagttgtcatgctgacatggctaccgccagaagttgttacattaagttgtagccttttggcgtcatcaccggcttgtgtttgaaccgg 365  Q
    | || || |  || || | ||| || || || || || ||| |||| || || || ||||| |||||    || ||||||||||||||||||||||| ||    
T  36154781 cattgactgctccggtagccatactaacttgactgccaccataagtagtgacgttcagttgaagccta---gcatcatcaccggcttgtgtttgaacagg 36154685  T
Q  366 gttggttaaggtgtcaaagttcgagattgagatgaatgaggaaagtgtatggaattgtaacagttctactttgtgtctgtcactgagggaattaaggaaa 465  Q
    |||||||||||| || ||||| || || || | |||||| | ||| |  || || ||||| ||||| ||||| ||||| ||| ||||||| || |||||     
T  36154684 gttggttaaggtatcgaagtttgaaatagaaacgaatgaagcaagggagtgaaactgtaagagttcgactttttgtctatcagtgagggagttgaggaac 36154585  T
Q  466 cctggtttgagttttgaaaaggcattgtcttctggtgcaaaaagggttaa 515  Q
    |||| ||||||||| || || |||   |||||||||||||||| ||||||    
T  36154584 cctgctttgagtttggagaatgcagaatcttctggtgcaaaaatggttaa 36154535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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