View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20122_low_7 (Length: 435)

Name: NF20122_low_7
Description: NF20122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20122_low_7
NF20122_low_7
[»] chr6 (2 HSPs)
chr6 (18-72)||(32314603-32314657)
chr6 (296-359)||(1912440-1912503)
[»] chr1 (3 HSPs)
chr1 (304-357)||(46937627-46937680)
chr1 (320-357)||(5898484-5898521)
chr1 (295-360)||(15255151-15255216)
[»] scaffold0223 (1 HSPs)
scaffold0223 (284-365)||(10600-10681)
[»] chr5 (1 HSPs)
chr5 (295-368)||(42440150-42440223)
[»] chr3 (1 HSPs)
chr3 (302-357)||(2990931-2990986)
[»] chr7 (2 HSPs)
chr7 (296-360)||(32612395-32612459)
chr7 (296-360)||(24673358-24673422)
[»] chr4 (1 HSPs)
chr4 (297-348)||(26275472-26275523)
[»] chr8 (1 HSPs)
chr8 (314-370)||(42822638-42822694)


Alignment Details
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 32314603 - 32314657
Alignment:
Q  18 atgttagtgttcgacactgacacgacatagatacatattttttcaaatgattacc 72  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  32314603 atgttagtgttcgacactgattcgacatagatacatattttttcaaatgattacc 32314657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 1912440 - 1912503
Alignment:
Q  296 ggatcgcagaaaatagaggttttttcaaaatccgctatgcaacagtgttatagcgccactatag 359  Q
    ||||||| |||||||||||||| |||||| ||||||||||||| ||| ||||||| ||||||||    
T  1912440 ggatcgcggaaaatagaggtttgttcaaattccgctatgcaacggtgctatagcgtcactatag 1912503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 46937680 - 46937627
Alignment:
Q  304 gaaaatagaggttttttcaaaatccgctatgcaacagtgttatagcgccactat 357  Q
    |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  46937680 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactat 46937627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 5898521 - 5898484
Alignment:
Q  320 tcaaaatccgctatgcaacagtgttatagcgccactat 357  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  5898521 tcaaaatccgctatgctacagtgctatagcgccactat 5898484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 15255151 - 15255216
Alignment:
Q  295 tggatcgcagaaaatagaggttttttcaaaatccgctatgcaacagtgttatagcgccactatagc 360  Q
    ||||||||||||||||| ||||| || ||| || ||||||||||| || ||||| ||| |||||||    
T  15255151 tggatcgcagaaaatagtggtttgtttaaattctgctatgcaacattgctatagtgccgctatagc 15255216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 10600 - 10681
Alignment:
Q  284 gttatcaaatgtggatcgcagaaaatagaggttttttcaaaatccgctatgcaacagtgttatagcgccactatagcttcta 365  Q
    |||||||| |||| |||||||||||||| ||||| |||||| || ||||||||||||| |||||  ||| ||||||| ||||    
T  10600 gttatcaattgtgaatcgcagaaaatagcggtttgttcaaattctgctatgcaacagtattataatgcctctatagcctcta 10681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 368
Target Start/End: Complemental strand, 42440223 - 42440150
Alignment:
Q  295 tggatcgcagaaaatagaggttttttcaaaatccgctatgcaacagtgttatagcgccactatagcttctattt 368  Q
    |||||||||||||| || ||||| |||||| |||||||||| ||||||||||||| |  ||||||| |||||||    
T  42440223 tggatcgcagaaaacagtggtttgttcaaattccgctatgctacagtgttatagcactgctatagcctctattt 42440150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 357
Target Start/End: Original strand, 2990931 - 2990986
Alignment:
Q  302 cagaaaatagaggttttttcaaaatccgctatgcaacagtgttatagcgccactat 357  Q
    |||||||||||||||  |||||| ||||||||||||||||| ||||| ||||||||    
T  2990931 cagaaaatagaggttcattcaaattccgctatgcaacagtgatatagggccactat 2990986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 32612395 - 32612459
Alignment:
Q  296 ggatcgcagaaaatagaggttttttcaaaatccgctatgcaacagtgttatagcgccactatagc 360  Q
    |||||||||||||||| |||||  ||||| |||||||  |||||||| ||||||||||| |||||    
T  32612395 ggatcgcagaaaatagcggtttagtcaaattccgctacacaacagtgctatagcgccaccatagc 32612459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 24673358 - 24673422
Alignment:
Q  296 ggatcgcagaaaatagaggttttttcaaaatccgctatgcaacagtgttatagcgccactatagc 360  Q
    ||||| |||||||||| ||||| |||||| || |||||||||||||| ||| | ||| |||||||    
T  24673358 ggatcacagaaaatagtggtttgttcaaattcagctatgcaacagtgatatggtgccgctatagc 24673422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 348
Target Start/End: Original strand, 26275472 - 26275523
Alignment:
Q  297 gatcgcagaaaatagaggttttttcaaaatccgctatgcaacagtgttatag 348  Q
    ||||||||||||||| | ||| |||||| |||||||||||| ||||||||||    
T  26275472 gatcgcagaaaatagcgatttgttcaaattccgctatgcaaaagtgttatag 26275523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 42822694 - 42822638
Alignment:
Q  314 gttttttcaaaatccgctatgcaacagtgttatagcgccactatagcttctatttca 370  Q
    |||| |||||| ||| ||||||||||||| ||||||||| |||||||  ||||||||    
T  42822694 gtttgttcaaattccactatgcaacagtgctatagcgccgctatagccactatttca 42822638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University