View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20122_low_9 (Length: 330)

Name: NF20122_low_9
Description: NF20122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20122_low_9
NF20122_low_9
[»] chr8 (4 HSPs)
chr8 (18-321)||(32507269-32507572)
chr8 (34-120)||(34770944-34771029)
chr8 (81-109)||(7008721-7008749)
chr8 (71-111)||(10758174-10758214)
[»] chr5 (2 HSPs)
chr5 (219-319)||(8093401-8093501)
chr5 (28-110)||(40159888-40159970)
[»] chr3 (3 HSPs)
chr3 (174-277)||(44100944-44101047)
chr3 (81-109)||(28779442-28779470)
chr3 (81-109)||(43875589-43875617)
[»] chr7 (3 HSPs)
chr7 (64-109)||(28691755-28691800)
chr7 (33-109)||(43854960-43855036)
chr7 (78-109)||(32157082-32157113)
[»] chr4 (3 HSPs)
chr4 (64-109)||(41433481-41433526)
chr4 (81-109)||(679414-679442)
chr4 (77-109)||(37575855-37575887)
[»] chr2 (7 HSPs)
chr2 (64-105)||(3102798-3102839)
chr2 (78-111)||(9595378-9595411)
chr2 (28-109)||(15120253-15120334)
chr2 (81-109)||(6561460-6561488)
chr2 (71-111)||(37419584-37419624)
chr2 (81-113)||(38388815-38388847)
chr2 (70-110)||(41880443-41880483)
[»] chr1 (1 HSPs)
chr1 (81-113)||(37617380-37617412)


Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 32507269 - 32507572
Alignment:
Q  18 aaaagacataataaattgttttcataagctctctcaaacagaatagcaaatgtttatattagcagataaactcaaataagtcaattcaaacatgactttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32507269 aaaagacataataaattgttttcataagctctctcaaacagaatagcaaatgtttatattagcagataaactcaaataagtcaattcaaatatgactttt 32507368  T
Q  118 agtaataaatgtgtacatgagtttctcaaaactaaaaactttactctgcgtttcaacagatatggtaccacaatgtaccacacgttaagctagctgaagt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32507369 agtaataaatgtgtacatgagtttctcaaaactaaaaactttactctgcgtttcaacagatatggtaccacaatgtaccacacgttaagctagctgaagt 32507468  T
Q  218 gaagggacatcaaaattgggtgaagttgatgggtgagtttttgacattccctggtggtggcactcagttcattcatggtgctctccattatattgatatt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32507469 gaagggacatcaaaattgggtgaagttgatgggtgagtttttgacattccctggtggtggcactcagttcattcatggtgctctccattatattgatttt 32507568  T
Q  318 cttc 321  Q
    ||||    
T  32507569 cttc 32507572  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 34770944 - 34771029
Alignment:
Q  34 tgttttcataagctctctcaaacagaatagcaaatgtttatattagcagataaactcaaataagtcaattcaaacatgacttttagt 120  Q
    |||||||||| | ||||||||||||  |  ||| || ||||  |||||||||||||||||||||||||  |||||||| ||||||||    
T  34770944 tgttttcataggatctctcaaacagtttcacaagtgcttatgctagcagataaactcaaataagtcaaaccaaacatg-cttttagt 34771029  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 7008721 - 7008749
Alignment:
Q  81 agataaactcaaataagtcaattcaaaca 109  Q
    |||||||||||||||||||||||||||||    
T  7008721 agataaactcaaataagtcaattcaaaca 7008749  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 10758214 - 10758174
Alignment:
Q  71 ttatattagcagataaactcaaataagtcaattcaaacatg 111  Q
    |||| |||||||||||  |||||||||||||||||||||||    
T  10758214 ttatgttagcagataagttcaaataagtcaattcaaacatg 10758174  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 319
Target Start/End: Complemental strand, 8093501 - 8093401
Alignment:
Q  219 aagggacatcaaaattgggtgaagttgatgggtgagtttttgacattccctggtggtggcactcagttcattcatggtgctctccattatattgatattc 318  Q
    ||||||||||| |||||||||||| ||   ||||| || ||||||||||| || ||||||||||| ||||||||||| ||||| || || |||||| |||    
T  8093501 aagggacatcagaattgggtgaaggtgtcaggtgaattcttgacattcccaggaggtggcactcaattcattcatggagctctacactacattgattttc 8093402  T
Q  319 t 319  Q
    |    
T  8093401 t 8093401  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 40159888 - 40159970
Alignment:
Q  28 ataaattgttttcataagctctctcaaacagaatagcaaatgtttatattagcagataaactcaaataagtcaattcaaacat 110  Q
    |||| |||||||  |||||||| |||||||| ||  || |||||||| | || ||||||||| ||||||||||||| ||||||    
T  40159888 ataagttgtttttctaagctctttcaaacagtatcacacatgtttatgtaagtagataaacttaaataagtcaatttaaacat 40159970  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 44100944 - 44101047
Alignment:
Q  174 cagatatggtaccacaatgtaccacacgttaagctagctgaagtgaagggacatcaaaattgggtgaagttgatgggtgagtttttgacattccctggtg 273  Q
    |||||||||||  ||||||| ||||||  |||||| |||||||| ||||| |||||||||||||||||  | | |||||||| | | || || |||||||    
T  44100944 cagatatggtattacaatgttccacacactaagcttgctgaagttaaggggcatcaaaattgggtgaaagttacgggtgagtatcttacttttcctggtg 44101043  T
Q  274 gtgg 277  Q
    ||||    
T  44101044 gtgg 44101047  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 28779442 - 28779470
Alignment:
Q  81 agataaactcaaataagtcaattcaaaca 109  Q
    |||||||||||||||||||||||||||||    
T  28779442 agataaactcaaataagtcaattcaaaca 28779470  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 43875589 - 43875617
Alignment:
Q  81 agataaactcaaataagtcaattcaaaca 109  Q
    |||||||||||||||||||||||||||||    
T  43875589 agataaactcaaataagtcaattcaaaca 43875617  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 28691800 - 28691755
Alignment:
Q  64 caaatgtttatattagcagataaactcaaataagtcaattcaaaca 109  Q
    |||||| |||| ||||||||||||||||||||||||||| ||||||    
T  28691800 caaatgcttatgttagcagataaactcaaataagtcaatccaaaca 28691755  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 43855036 - 43854960
Alignment:
Q  33 ttgttttcataagctctctcaaacagaatagcaaatgtttatattagcagataaactcaaataagtcaattcaaaca 109  Q
    |||||||||||||||||| |||| ||  | ||||||| |||| |||| ||||||  ||||||||| |||||||||||    
T  43855036 ttgttttcataagctctcccaaatagtgtcgcaaatgcttatgttagtagataagttcaaataagccaattcaaaca 43854960  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 32157082 - 32157113
Alignment:
Q  78 agcagataaactcaaataagtcaattcaaaca 109  Q
    ||||||||||||||||||||||||||||||||    
T  32157082 agcagataaactcaaataagtcaattcaaaca 32157113  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 41433481 - 41433526
Alignment:
Q  64 caaatgtttatattagcagataaactcaaataagtcaattcaaaca 109  Q
    |||||| |||| | || |||||||||||||||||||||||||||||    
T  41433481 caaatgcttatgtcaggagataaactcaaataagtcaattcaaaca 41433526  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 679414 - 679442
Alignment:
Q  81 agataaactcaaataagtcaattcaaaca 109  Q
    |||||||||||||||||||||||||||||    
T  679414 agataaactcaaataagtcaattcaaaca 679442  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 37575887 - 37575855
Alignment:
Q  77 tagcagataaactcaaataagtcaattcaaaca 109  Q
    |||||||||||||||||||||||||| ||||||    
T  37575887 tagcagataaactcaaataagtcaatccaaaca 37575855  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 3102798 - 3102839
Alignment:
Q  64 caaatgtttatattagcagataaactcaaataagtcaattca 105  Q
    ||||||||||| | ||| ||||||||||||||||||||||||    
T  3102798 caaatgtttatgtgagcggataaactcaaataagtcaattca 3102839  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 9595378 - 9595411
Alignment:
Q  78 agcagataaactcaaataagtcaattcaaacatg 111  Q
    ||||||||||||||||||| ||||||||||||||    
T  9595378 agcagataaactcaaataaatcaattcaaacatg 9595411  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 15120253 - 15120334
Alignment:
Q  28 ataaattgttttcataagctctctcaaacagaatagcaaatgtttatattagcagataaactcaaataagtcaattcaaaca 109  Q
    |||| |||||| ||||||||||| |||||||| |  ||| |||||||  ||| ||||||  |||||||||||||| ||||||    
T  15120253 ataagttgtttccataagctctcccaaacagattcacaactgtttatgctagtagataagttcaaataagtcaatccaaaca 15120334  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 6561460 - 6561488
Alignment:
Q  81 agataaactcaaataagtcaattcaaaca 109  Q
    |||||||||||||||||||||||||||||    
T  6561460 agataaactcaaataagtcaattcaaaca 6561488  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 37419624 - 37419584
Alignment:
Q  71 ttatattagcagataaactcaaataagtcaattcaaacatg 111  Q
    |||||| || |||||||||||||||||||||| ||||||||    
T  37419624 ttatataagtagataaactcaaataagtcaatccaaacatg 37419584  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 38388815 - 38388847
Alignment:
Q  81 agataaactcaaataagtcaattcaaacatgac 113  Q
    |||| ||||||||||||||||||||||||||||    
T  38388815 agatgaactcaaataagtcaattcaaacatgac 38388847  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 41880483 - 41880443
Alignment:
Q  70 tttatattagcagataaactcaaataagtcaattcaaacat 110  Q
    ||||||| ||| ||||||||||||||||| |||||||||||    
T  41880483 tttatatcagccgataaactcaaataagttaattcaaacat 41880443  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 37617412 - 37617380
Alignment:
Q  81 agataaactcaaataagtcaattcaaacatgac 113  Q
    |||||||||||||||||||||| ||||||||||    
T  37617412 agataaactcaaataagtcaatccaaacatgac 37617380  T

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