View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20123_high_1 (Length: 468)
Name: NF20123_high_1
Description: NF20123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20123_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 463
Target Start/End: Complemental strand, 41489296 - 41488851
Alignment:
| Q |
19 |
aattgctcatattaactcctgttattaacattctcattggcattgtttgtattgcccgaattaagaaattatataagttgattgttaggggcaagtacaa |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41489296 |
aattgctcatattaactcctgtcattaacattctcattggcattgtttgtattgcccgaattaagaaattatataagttgattgttaggggcaagtacaa |
41489197 |
T |
|
| Q |
119 |
gctacctgactcattatttttattttggatccacgagttagggattag-gggacttaggtaagttgaaagtttattttgtacgaacatcagtagtcattg |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | ||||| |||||||||||||||||||||||||||||| ||| |
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| T |
41489196 |
gctacctgactcattatttttattttggatacacgagttagggattagagggacttaagcaagttaaaagtttattttgtacgaacatcagtagtcgttg |
41489097 |
T |
|
| Q |
218 |
attaaaaattaaatgtaatctctaannnnnnnnaatcccttacatcgctaaatactatactaaaggttatgatgaatctcattatttttaaattcttctt |
317 |
Q |
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||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
41489096 |
attaagaattaaatgtaatctttaattttttttaatcccttacatcgctaaataccatactaaaggttatgatgaatttcattatttttaaactcttctt |
41488997 |
T |
|
| Q |
318 |
atttcaatatgatttaatgattgnnnnnnnttattannnnnnnnagagaaaatataataatttatgctttacctatttttaaaatactacaaggaataat |
417 |
Q |
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|||| |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41488996 |
attttaatatgatttaatgattgaaaaaaattgttattttttttagagaaaatataataatttatgctttacctatttttaaaatactacaaggaataat |
41488897 |
T |
|
| Q |
418 |
tataaagttggtgaattttgtttgaactatgtgactgctctctgct |
463 |
Q |
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| T |
41488896 |
tataaagttggtgaattttgtttgaactatgtgactgccctctgct |
41488851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 448
Target Start/End: Complemental strand, 41484361 - 41484332
Alignment:
| Q |
419 |
ataaagttggtgaattttgtttgaactatg |
448 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41484361 |
ataaagttggtgaattttgtttgaactatg |
41484332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 140 - 327
Target Start/End: Original strand, 18663372 - 18663558
Alignment:
| Q |
140 |
attttggatccacgagttagggattag-gggacttaggtaagttgaaagtttattttgtacgaacatcagtagtcattgattaaaaattaaatgtaatct |
238 |
Q |
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||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||| |||||| ||| |||||| |||| ||| ||||||||||||||| |
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| T |
18663372 |
attttggatccacgagttagggattagagggacataggcaagttgaaattttatttggtacgagcatgggtagtcgttgactaagaattaaatgtaatct |
18663471 |
T |
|
| Q |
239 |
ctaannnnnnnnaatcccttacatcgctaaatactatactaaaggttatgatgaatctcattatttttaaattcttcttatttcaatat |
327 |
Q |
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|| | |||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18663472 |
cttatttttt--aatcacttacatcgctaaataccatactaagggttatgatgaatctcattatttttaaactcttcttatttcaatat |
18663558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 140 - 336
Target Start/End: Original strand, 18669790 - 18669985
Alignment:
| Q |
140 |
attttggatccacgagttagggattag-gggacttaggtaagttgaaagtttattttgtacgaacatcagtagtcattgattaaaaattaaatgtaatct |
238 |
Q |
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|
||||||||||||| |||||||||||| |||| |||| ||||||||| ||||||| |||||| ||| |||||| |||| ||| ||||||||||||||| |
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| T |
18669790 |
attttggatccacttgttagggattagagggatataggcaagttgaaattttatttggtacgagcatgggtagtcgttgactaagaattaaatgtaatct |
18669889 |
T |
|
| Q |
239 |
ctaannnnnnnnaatcccttacatcgctaaatactatactaaaggttatgatgaatctcattatttttaaattcttcttatttcaatatgatttaatg |
336 |
Q |
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|| | |||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18669890 |
cttatttttt--aatcacttacatcgctaaataccatactaagggttatgatgaatctcattatttttaaactcttcttatttcaatatgatttaatg |
18669985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 449
Target Start/End: Complemental strand, 9447303 - 9447236
Alignment:
| Q |
384 |
ctttacctattt-ttaaaatactacaaggaataatt-ataaagttggtgaattttgtttgaactatgt |
449 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||| |||||||| |
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| T |
9447303 |
ctttacctatttcttcaaatactacaaagaataatttataaagttggtgaattttgtttaaactatgt |
9447236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 449
Target Start/End: Complemental strand, 9436229 - 9436166
Alignment:
| Q |
384 |
ctttacctattt-ttaaaatactacaaggaataattataaagttggtgaattttgtttgaactatgt |
449 |
Q |
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| T |
9436229 |
ctttacctatttcttcaaatactacaaagaatatt---aaagttggtgaattttgtttgaactatgt |
9436166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 9411680 - 9411618
Alignment:
| Q |
384 |
ctttacctattt-ttaaaatactacaaggaataatt-ataaagttggtgaattttgtttgaact |
445 |
Q |
| |
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|||||||||||| || ||||||||||| |||||||| ||||||||| ||||||||||||||||| |
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| T |
9411680 |
ctttacctatttcttcaaatactacaaagaataatttataaagttg-tgaattttgtttgaact |
9411618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 399 - 449
Target Start/End: Complemental strand, 29272064 - 29272013
Alignment:
| Q |
399 |
aaatactacaaggaataatt-ataaagttggtgaattttgtttgaactatgt |
449 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||| |||||||| |
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| T |
29272064 |
aaatactacaaagaataatttataaagttggtgaattttgtttaaactatgt |
29272013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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