View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20123_low_2 (Length: 237)
Name: NF20123_low_2
Description: NF20123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20123_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 2783970 - 2784032
Alignment:
| Q |
109 |
ttttttacgcaaaattaaggtaggaaagaaatgtacatttattggtgatttaatgccaagagagt |
173 |
Q |
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| T |
2783970 |
ttttttacgcaaaattaaggtaggaaa--aatgtacatttattggtgatttaatgctatgagagt |
2784032 |
T |
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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 2784063 - 2784104
Alignment:
| Q |
183 |
tgtatgtatccttttgccaaaatttaccaccacggatacaag |
224 |
Q |
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| T |
2784063 |
tgtatgtatccttttgccaaaatttaccaccacggatacaag |
2784104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 33740735 - 33740804
Alignment:
| Q |
24 |
acattattaaaaatatttaa-ttcgaaattatgtattggcatacatgatagaatcaattaggtcacataa |
92 |
Q |
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| T |
33740735 |
acattattaaagatatttaagtttaaaattgtgtattggcatacgtgacagagtcaactaggtcacataa |
33740804 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 26210900 - 26210990
Alignment:
| Q |
1 |
attttcataattttttctaatgtacattattaaaaatatttaa-ttcgaaattatgtattggcatacatgatagaatcaattaggtcacataa |
92 |
Q |
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| T |
26210900 |
attttcataattttttctaa--tatattattaaagatatttaagttcaaaattatgtattggcatatgtgacagagtcaactaagtcacataa |
26210990 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 9281369 - 9281275
Alignment:
| Q |
1 |
attttcataattttttctaatgtacattattaaaaatatttaa-ttcgaaattatgtattggcatacatgatagaatcaattaggtcacataacatg |
96 |
Q |
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| T |
9281369 |
attttcataattttttctaa--tagattattaaagatatttaagttcaaaattatgcattgacatacgtgacaaaatcaactaggtcatataacatg |
9281275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 8980827 - 8980917
Alignment:
| Q |
1 |
attttcataattttttctaatgtacattattaaaaatatttaa-ttcgaaattatgtattggcatacatgatagaatcaattaggtcacataa |
92 |
Q |
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| T |
8980827 |
attttcataattttttctaa--tagattattaaaaatatttaagttcaaaattgtggattgacatacgtgacacagtcaaccaggtcacataa |
8980917 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 27505855 - 27505927
Alignment:
| Q |
27 |
ttattaaaaatatttaa-ttcgaaattatgtattggcatacatgatagaatcaattaggtcacataacatgag |
98 |
Q |
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| T |
27505855 |
ttattaaagatatttaaattcaaaactgtgtattgacatacgtgacagagtcaattaggtcacataatatgag |
27505927 |
T |
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