View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20123_low_3 (Length: 231)

Name: NF20123_low_3
Description: NF20123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20123_low_3
NF20123_low_3
[»] chr2 (13 HSPs)
chr2 (35-112)||(19263059-19263136)
chr2 (1-34)||(30099277-30099310)
chr2 (1-37)||(13197805-13197841)
chr2 (1-36)||(3055558-3055593)
chr2 (1-36)||(4684027-4684062)
chr2 (1-36)||(6648614-6648649)
chr2 (1-36)||(15896842-15896877)
chr2 (1-36)||(16044412-16044447)
chr2 (1-36)||(37666705-37666740)
chr2 (1-36)||(37990108-37990143)
chr2 (1-36)||(41478734-41478769)
chr2 (1-36)||(44397547-44397582)
chr2 (1-36)||(44398686-44398721)
[»] chr8 (17 HSPs)
chr8 (1-36)||(25601095-25601130)
chr8 (1-39)||(32114570-32114608)
chr8 (1-37)||(3304373-3304409)
chr8 (1-37)||(15888447-15888483)
chr8 (1-37)||(44498282-44498318)
chr8 (1-36)||(54707-54742)
chr8 (1-36)||(2890257-2890292)
chr8 (1-36)||(4245676-4245711)
chr8 (1-36)||(6552655-6552690)
chr8 (2-37)||(7012170-7012205)
chr8 (1-36)||(7785873-7785908)
chr8 (1-36)||(7805794-7805829)
chr8 (1-36)||(12343235-12343270)
chr8 (1-36)||(32211458-32211493)
chr8 (1-36)||(43199449-43199484)
chr8 (2-36)||(33289357-33289391)
chr8 (2-36)||(39571299-39571333)
[»] chr6 (10 HSPs)
chr6 (1-36)||(6143554-6143589)
chr6 (1-36)||(2830335-2830370)
chr6 (1-36)||(6330115-6330150)
chr6 (1-36)||(8099530-8099565)
chr6 (1-36)||(8383064-8383099)
chr6 (1-36)||(9644696-9644731)
chr6 (1-36)||(9650713-9650748)
chr6 (1-36)||(11572240-11572275)
chr6 (1-36)||(26602323-26602358)
chr6 (1-36)||(33052889-33052924)
[»] chr5 (9 HSPs)
chr5 (1-36)||(11795168-11795203)
chr5 (1-36)||(36563633-36563668)
chr5 (1-37)||(26350445-26350481)
chr5 (1-36)||(582989-583024)
chr5 (1-36)||(9395350-9395385)
chr5 (1-36)||(17025624-17025659)
chr5 (1-36)||(20848074-20848109)
chr5 (1-36)||(37149050-37149085)
chr5 (1-36)||(37641953-37641988)
[»] chr4 (13 HSPs)
chr4 (1-39)||(20538781-20538819)
chr4 (4-36)||(47838715-47838747)
chr4 (1-36)||(3372121-3372156)
chr4 (1-36)||(7579310-7579345)
chr4 (1-36)||(24704370-24704405)
chr4 (1-36)||(26231577-26231612)
chr4 (1-36)||(33551201-33551236)
chr4 (1-36)||(47833611-47833646)
chr4 (1-36)||(48336263-48336298)
chr4 (1-36)||(53337370-53337405)
chr4 (2-36)||(6121989-6122023)
chr4 (2-43)||(40913285-40913326)
chr4 (4-36)||(3992976-3993008)
[»] chr1 (13 HSPs)
chr1 (1-38)||(23278096-23278133)
chr1 (1-38)||(31842890-31842927)
chr1 (1-41)||(9981642-9981682)
chr1 (1-36)||(1050888-1050923)
chr1 (1-36)||(11795933-11795968)
chr1 (1-36)||(12483723-12483758)
chr1 (1-36)||(26471160-26471195)
chr1 (1-36)||(27159453-27159488)
chr1 (1-36)||(34042696-34042731)
chr1 (1-36)||(39402061-39402096)
chr1 (1-36)||(44668188-44668223)
chr1 (1-36)||(47216794-47216829)
chr1 (1-38)||(47777576-47777613)
[»] chr7 (14 HSPs)
chr7 (1-37)||(36583394-36583430)
chr7 (1-36)||(1565824-1565859)
chr7 (1-36)||(1738542-1738577)
chr7 (1-36)||(7240749-7240784)
chr7 (1-36)||(7482225-7482260)
chr7 (1-36)||(23314234-23314269)
chr7 (1-36)||(28536846-28536881)
chr7 (1-36)||(31319494-31319529)
chr7 (1-36)||(38064008-38064043)
chr7 (1-36)||(46840860-46840895)
chr7 (3-37)||(38441459-38441493)
chr7 (1-37)||(94413-94449)
chr7 (4-36)||(3411449-3411481)
chr7 (1-37)||(36016291-36016327)
[»] chr3 (13 HSPs)
chr3 (1-37)||(10297978-10298014)
chr3 (1-36)||(4238594-4238629)
chr3 (1-36)||(8437425-8437460)
chr3 (1-36)||(19557147-19557182)
chr3 (1-36)||(21295421-21295456)
chr3 (1-36)||(22721931-22721966)
chr3 (1-36)||(34080125-34080160)
chr3 (1-36)||(44785491-44785526)
chr3 (1-36)||(49823476-49823511)
chr3 (2-36)||(38964392-38964426)
chr3 (1-43)||(51406666-51406708)
chr3 (1-37)||(17653711-17653747)
chr3 (1-37)||(48340396-48340432)
[»] scaffold0482 (1 HSPs)
scaffold0482 (1-36)||(12860-12895)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-36)||(6226-6261)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-36)||(23785-23820)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-36)||(49505-49540)


Alignment Details
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 19263059 - 19263136
Alignment:
Q  35 tacatatttccacaaggacaactttctctactgggaaccagacggctcaacaaaaatatatttcctaaacaccctaaa 112  Q
    ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19263059 tacatattttcacaaggagaactttctctactgggaaccagagggctcaacaaaaatatatttcctaaacaccctaaa 19263136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30099277 - 30099310
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtag 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30099277 cctaaatttctcttataaataggatcggaggtag 30099310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13197805 - 13197841
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtac 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  13197805 cctaaatttctcttataaataggaccggaggtagtac 13197841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3055593 - 3055558
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  3055593 cctaaatttctcttataaataggaccggaggtagta 3055558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4684027 - 4684062
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  4684027 cctaaatttctcttataaataggaccggaggtagta 4684062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6648614 - 6648649
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  6648614 cctaaatttctcttataaataggaccggaggtagta 6648649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 15896877 - 15896842
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  15896877 cctaaatttctcttataaataggaccggaggtagta 15896842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 16044412 - 16044447
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  16044412 cctaaatttctcttataaataggaccggaggtagta 16044447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37666705 - 37666740
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  37666705 cctaaatttctcttataaataggaccggaggtagta 37666740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37990108 - 37990143
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  37990108 cctaaatttctcttataaataggaccggaggtagta 37990143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 41478734 - 41478769
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  41478734 cctaaatttctcttataaataggaccggaggtagta 41478769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44397582 - 44397547
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  44397582 cctaaatttctcttataaataggaccggaggtagta 44397547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 44398721 - 44398686
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  44398721 cctaaatttctcttataaataggaccggaggtagta 44398686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25601095 - 25601130
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  25601095 cctaaatttctcttataaataggatcggaggtagta 25601130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32114570 - 32114608
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtacat 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  32114570 cctaaatttctcttataaataggaccggaggtagtacat 32114608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3304373 - 3304409
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtac 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  3304373 cctaaatttctcttataaataggaccggaggtagtac 3304409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15888447 - 15888483
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtac 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  15888447 cctaaatttctcttataaataggaccggaggtagtac 15888483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44498282 - 44498318
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtac 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  44498282 cctaaatttctcttataaataggaccggaggtagtac 44498318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 54707 - 54742
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  54707 cctaaatttctcttataaataggaccggaggtagta 54742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2890257 - 2890292
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  2890257 cctaaatttctcttataaataggaccggaggtagta 2890292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4245676 - 4245711
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  4245676 cctaaatttctcttataaataggaccggaggtagta 4245711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6552690 - 6552655
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  6552690 cctaaatttctcttataaataggaccggaggtagta 6552655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 7012205 - 7012170
Alignment:
Q  2 ctaaatttctcttataaataggatcggaggtagtac 37  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7012205 ctaaatttctcttataaataggaccggaggtagtac 7012170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7785873 - 7785908
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  7785873 cctaaatttctcttataaataggaccggaggtagta 7785908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7805794 - 7805829
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  7805794 cctaaatttctcttataaataggaccggaggtagta 7805829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 12343235 - 12343270
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  12343235 cctaaatttctcttataaataggaccggaggtagta 12343270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32211458 - 32211493
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  32211458 cctaaatttctcttataaataggaccggaggtagta 32211493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 43199449 - 43199484
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  43199449 cctaaatttctcttataaataggaccggaggtagta 43199484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 33289357 - 33289391
Alignment:
Q  2 ctaaatttctcttataaataggatcggaggtagta 36  Q
    ||||||||||||||||||||||| |||||||||||    
T  33289357 ctaaatttctcttataaataggaccggaggtagta 33289391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 39571299 - 39571333
Alignment:
Q  2 ctaaatttctcttataaataggatcggaggtagta 36  Q
    ||||||||||||||||||||||| |||||||||||    
T  39571299 ctaaatttctcttataaataggaccggaggtagta 39571333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6143589 - 6143554
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  6143589 cctaaatttctcttataaataggatcggaggtagta 6143554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 2830370 - 2830335
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  2830370 cctaaatttctcttataaataggaccggaggtagta 2830335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6330150 - 6330115
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  6330150 cctaaatttctcttataaataggaccggaggtagta 6330115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8099565 - 8099530
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  8099565 cctaaatttctcttataaataggaccggaggtagta 8099530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 8383064 - 8383099
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  8383064 cctaaatttctcttataaataggaccggaggtagta 8383099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9644731 - 9644696
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  9644731 cctaaatttctcttataaataggaccggaggtagta 9644696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9650748 - 9650713
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  9650748 cctaaatttctcttataaataggaccggaggtagta 9650713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11572240 - 11572275
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  11572240 cctaaatttctcttataaataggaccggaggtagta 11572275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 26602358 - 26602323
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  26602358 cctaaatttctcttataaataggaccggaggtagta 26602323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 33052889 - 33052924
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  33052889 cctaaatttctcttataaataggaccggaggtagta 33052924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 11795203 - 11795168
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  11795203 cctaaatttctcttataaataggatcggaggtagta 11795168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36563633 - 36563668
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  36563633 cctaaatttctcttataaataggatcggaggtagta 36563668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26350445 - 26350481
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtac 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  26350445 cctaaatttctcttataaataggatcggagggagtac 26350481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 583024 - 582989
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  583024 cctaaatttctcttataaataggaccggaggtagta 582989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9395385 - 9395350
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  9395385 cctaaatttctcttataaataggaccggaggtagta 9395350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 17025659 - 17025624
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  17025659 cctaaatttctcttataaataggaccggaggtagta 17025624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 20848109 - 20848074
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  20848109 cctaaatttctcttataaataggaccggaggtagta 20848074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37149050 - 37149085
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  37149050 cctaaatttctcttataaataggaccggaggtagta 37149085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 37641988 - 37641953
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  37641988 cctaaatttctcttataaataggaccggaggtagta 37641953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 20538781 - 20538819
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtacat 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  20538781 cctaaatttctcttataaataggaccggaggtagtacat 20538819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 47838715 - 47838747
Alignment:
Q  4 aaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||||||||||||    
T  47838715 aaatttctcttataaataggatcggaggtagta 47838747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3372156 - 3372121
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  3372156 cctaaatttctcttataaataggaccggaggtagta 3372121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7579345 - 7579310
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  7579345 cctaaatttctcttataaataggaccggaggtagta 7579310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 24704405 - 24704370
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  24704405 cctaaatttctcttataaataggaccggaggtagta 24704370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 26231612 - 26231577
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  26231612 cctaaatttctcttataaataggaccggaggtagta 26231577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33551236 - 33551201
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  33551236 cctaaatttctcttataaataggaccggaggtagta 33551201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 47833646 - 47833611
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  47833646 cctaaatttctcttataaataggaccggaggtagta 47833611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 48336298 - 48336263
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  48336298 cctaaatttctcttataaataggaccggaggtagta 48336263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 53337405 - 53337370
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  53337405 cctaaatttctcttataaataggaccggaggtagta 53337370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 6121989 - 6122023
Alignment:
Q  2 ctaaatttctcttataaataggatcggaggtagta 36  Q
    ||||||||||||||||||||||| |||||||||||    
T  6121989 ctaaatttctcttataaataggaccggaggtagta 6122023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 40913285 - 40913326
Alignment:
Q  2 ctaaatttctcttataaataggatcggaggtagtacatattt 43  Q
    ||||||||||||||||||||||| |||||| |||| ||||||    
T  40913285 ctaaatttctcttataaataggaccggagggagtatatattt 40913326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 3993008 - 3992976
Alignment:
Q  4 aaatttctcttataaataggatcggaggtagta 36  Q
    ||||||||||||||||||||| |||||||||||    
T  3993008 aaatttctcttataaataggaccggaggtagta 3992976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23278096 - 23278133
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtaca 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  23278096 cctaaatttctcttataaataggaccggaggtagtaca 23278133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31842890 - 31842927
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtaca 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  31842890 cctaaatttctcttataaataggaccggaggtagtaca 31842927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9981682 - 9981642
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtacatat 41  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  9981682 cctaaatttctcttataaataggaccggaggtagtatatat 9981642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1050923 - 1050888
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  1050923 cctaaatttctcttataaataggaccggaggtagta 1050888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 11795968 - 11795933
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  11795968 cctaaatttctcttataaataggaccggaggtagta 11795933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 12483723 - 12483758
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  12483723 cctaaatttctcttataaataggaccggaggtagta 12483758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26471160 - 26471195
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  26471160 cctaaatttctcttataaataggaccggaggtagta 26471195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27159453 - 27159488
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  27159453 cctaaatttctcttataaataggaccggaggtagta 27159488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 34042731 - 34042696
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  34042731 cctaaatttctcttataaataggaccggaggtagta 34042696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39402061 - 39402096
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  39402061 cctaaatttctcttataaataggaccggaggtagta 39402096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44668188 - 44668223
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  44668188 cctaaatttctcttataaataggaccggaggtagta 44668223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 47216794 - 47216829
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  47216794 cctaaatttctcttataaataggaccggaggtagta 47216829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47777576 - 47777613
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtaca 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  47777576 cctaaatttctcttataaataggaccgggggtagtaca 47777613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36583430 - 36583394
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtac 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  36583430 cctaaatttctcttataaataggaccggaggtagtac 36583394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1565824 - 1565859
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  1565824 cctaaatttctcttataaataggaccggaggtagta 1565859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1738542 - 1738577
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  1738542 cctaaatttctcttataaataggaccggaggtagta 1738577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7240784 - 7240749
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  7240784 cctaaatttctcttataaataggaccggaggtagta 7240749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7482260 - 7482225
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  7482260 cctaaatttctcttataaataggaccggaggtagta 7482225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23314234 - 23314269
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  23314234 cctaaatttctcttataaataggaccggaggtagta 23314269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28536846 - 28536881
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  28536846 cctaaatttctcttataaataggaccggaggtagta 28536881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31319494 - 31319529
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  31319494 cctaaatttctcttataaataggaccggaggtagta 31319529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38064008 - 38064043
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  38064008 cctaaatttctcttataaataggaccggaggtagta 38064043  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 46840895 - 46840860
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  46840895 cctaaatttctcttataaataggaccggaggtagta 46840860  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 38441493 - 38441459
Alignment:
Q  3 taaatttctcttataaataggatcggaggtagtac 37  Q
    |||||||||||||||||||||| ||||||||||||    
T  38441493 taaatttctcttataaataggaccggaggtagtac 38441459  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 94413 - 94449
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtac 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  94413 cctaaatttctcttataaataggaccggagatagtac 94449  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 3411449 - 3411481
Alignment:
Q  4 aaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||||||| ||||    
T  3411449 aaatttctcttataaataggatcggagggagta 3411481  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36016291 - 36016327
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtac 37  Q
    |||||||||||||||||||||||| |||||| |||||    
T  36016291 cctaaatttctcttataaataggaccggagggagtac 36016327  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10298014 - 10297978
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtac 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  10298014 cctaaatttctcttataaataggaccggaggtagtac 10297978  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4238629 - 4238594
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  4238629 cctaaatttctcttataaataggaccggaggtagta 4238594  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8437460 - 8437425
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  8437460 cctaaatttctcttataaataggaccggaggtagta 8437425  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 19557147 - 19557182
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  19557147 cctaaatttctcttataaataggaccggaggtagta 19557182  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21295421 - 21295456
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  21295421 cctaaatttctcttataaataggaccggaggtagta 21295456  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22721966 - 22721931
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  22721966 cctaaatttctcttataaataggaccggaggtagta 22721931  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34080125 - 34080160
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  34080125 cctaaatttctcttataaataggaccggaggtagta 34080160  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44785491 - 44785526
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  44785491 cctaaatttctcttataaataggaccggaggtagta 44785526  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 49823476 - 49823511
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  49823476 cctaaatttctcttataaataggaccggaggtagta 49823511  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 38964426 - 38964392
Alignment:
Q  2 ctaaatttctcttataaataggatcggaggtagta 36  Q
    ||||||||||||||||||||||| |||||||||||    
T  38964426 ctaaatttctcttataaataggaccggaggtagta 38964392  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 51406708 - 51406666
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtacatattt 43  Q
    ||||||||||||||||||||| || |||||||||||| |||||    
T  51406708 cctaaatttctcttataaataagaccggaggtagtacctattt 51406666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17653747 - 17653711
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtac 37  Q
    |||||||||||||||||||||||| |||||| |||||    
T  17653747 cctaaatttctcttataaataggaccggagggagtac 17653711  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48340432 - 48340396
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagtac 37  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  48340432 cctaaatttctcttgtaaataggaccggaggtagtac 48340396  T

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Target: scaffold0482 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 12895 - 12860
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  12895 cctaaatttctcttataaataggaccggaggtagta 12860  T

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Target: scaffold0464 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6226 - 6261
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  6226 cctaaatttctcttataaataggaccggaggtagta 6261  T

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Target: scaffold0204 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23820 - 23785
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  23820 cctaaatttctcttataaataggaccggaggtagta 23785  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 49540 - 49505
Alignment:
Q  1 cctaaatttctcttataaataggatcggaggtagta 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  49540 cctaaatttctcttataaataggaccggaggtagta 49505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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