View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20124_high_5 (Length: 430)
Name: NF20124_high_5
Description: NF20124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20124_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 23640521 - 23640107
Alignment:
| Q |
1 |
aataagagatgcactttgcttcttcatggatgaagagaagggacatgaaattgcctttgtccaggctcctcagggctttgaaaatatcacaaaaaatgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
23640521 |
aataagagatgcactttgcttcttcatggatgaagagaagggacatgaaattgcctttgtgcagactcctcagggctttgaaaatatcacaaaaaatgac |
23640422 |
T |
|
| Q |
101 |
atatacggtggttctttgcttgtagcttatgaggtatagtagttcatatatgctaataaaattgaagtttattaatagaatatagttgtttacacctaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23640421 |
atatacggtggttctttgcttgtagcttatgaggtatagtagttcatatatgctaataaaattgaagtttattaatagaatatagttgtttacacctaaa |
23640322 |
T |
|
| Q |
201 |
aataattgtatttgctctcacctctcactacaaacttcctccaagccaccaccttcctctccccctcctagtccaaataaactttatgtacacatggatc |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23640321 |
aataattatatttgctctcacctctcactacaaacttcctccaagccaccaccttcctctccccctcctagtccaaataaactttatgtacacatggatc |
23640222 |
T |
|
| Q |
301 |
tggtggcgtgttccccgttccaacaactgcaccaccctctttcacattggttccatttacatatcggaagcttgctaggtcagcgctataatttataaac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23640221 |
tggtggcgtgttccccgttccaacaactgcaccaccctctttcacattggtaccatttgcatatcggaagcttgctaggtcagcgctataatttataaac |
23640122 |
T |
|
| Q |
401 |
ttttgaacatatatg |
415 |
Q |
| |
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||||||||||||||| |
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| T |
23640121 |
ttttgaacatatatg |
23640107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 23627911 - 23627795
Alignment:
| Q |
1 |
aataagagatgcactttgcttcttcatggatgaagagaagggacatgaaattgcctttgtccaggctcctcagggctttgaaaatatcacaaaaaatgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23627911 |
aataagagatgcactttgcttcttcatggatgaagagaagggacatgaaattgcctttgtgcaggctcctcagggctttgaaaatatcacaaaaaatgac |
23627812 |
T |
|
| Q |
101 |
atatacggtggttcttt |
117 |
Q |
| |
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||||||||||||||||| |
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| T |
23627811 |
atatacggtggttcttt |
23627795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 23654416 - 23654354
Alignment:
| Q |
23 |
ttcatggatgaagagaagggacatgaaattgcctttgtccaggctcctcagggctttgaaaat |
85 |
Q |
| |
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||||||||||||||||| || ||||||||||| ||||| ||| |||| |||| |||||||||| |
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| T |
23654416 |
ttcatggatgaagagaaaggccatgaaattgcttttgtgcagtctccacaggcctttgaaaat |
23654354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 27185218 - 27185265
Alignment:
| Q |
222 |
ctctcactacaaacttcctccaagccaccaccttcctctccccctcct |
269 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||||| ||| |||| |
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|
| T |
27185218 |
ctctctctacaaacttccaccaagccaccaccttcctcttcccttcct |
27185265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 27834760 - 27834807
Alignment:
| Q |
222 |
ctctcactacaaacttcctccaagccaccaccttcctctccccctcct |
269 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||| ||| |||| |
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|
| T |
27834760 |
ctctctctacaaacttccaccaagccaccaccttcctcttcccttcct |
27834807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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