View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20124_high_9 (Length: 254)
Name: NF20124_high_9
Description: NF20124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20124_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 34873213 - 34873441
Alignment:
| Q |
12 |
atgaaaactgttccaatgcactgagtaaacatgtaagtcatgtatctatttcatattttaactcgataaggccatttaacattgaaaaataaaattagga |
111 |
Q |
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| T |
34873213 |
atgaaaaatgttccaatgcactgagtaaacatgtaagtcatgtatctatttcatattttaactcgataaggccatttaacattgaaaaataaaattagga |
34873312 |
T |
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| Q |
112 |
ttttctaaataccaagtattatcgacacagaacatattcttactgtaaatcttgaagatatgtatgtta---aggagggtgtctacatatgcatcacgag |
208 |
Q |
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| T |
34873313 |
ttttctaaataccaagtattatcgacacagaacatattcttattgtaaatcttgaagctatgtatgttaattaggagggtgtctacatatgcatcacgag |
34873412 |
T |
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| Q |
209 |
ttcttttactaaattttttaactatgtgt |
237 |
Q |
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| T |
34873413 |
ttcttttattaaaatttttaattatgtgt |
34873441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 9919137 - 9919035
Alignment:
| Q |
12 |
atgaaaactgttccaatgcactgagtaaacatgtaagtcatgtatctatttcatatttt-aactcgataaggccatttaacattgaaaaataaaattagg |
110 |
Q |
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| T |
9919137 |
atgaaaattgttccaatgcactaaggaaacatgttaatcttgcatctgtttcatatttttaactcgacatggccatttaacattgaaaaataaaattagg |
9919038 |
T |
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| Q |
111 |
att |
113 |
Q |
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||| |
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| T |
9919037 |
att |
9919035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 34874885 - 34874950
Alignment:
| Q |
38 |
aaacatgtaagtcatgtatctatttcatattttaactcgataaggccatttaacattgaaaaataaaatta |
108 |
Q |
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| T |
34874885 |
aaacatgttagtcatgtatctgtttcatattttaactc-----ggtcatttaacattgaaaaataaaatta |
34874950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 9919019 - 9918905
Alignment:
| Q |
113 |
tttctaaataccaagtattatcgacacagaacatat-tcttactgtaaatcttgaagatatgt--atgttaaggagggtgtctacatatgcatcacgagt |
209 |
Q |
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| T |
9919019 |
tttctgaataccgagtattattgacacagaacatgtatcatattgtaaatcttgaagctatgtgagtgttaaggagggtgtcttcatat--ataatcagt |
9918922 |
T |
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| Q |
210 |
tcttttactaaattttt |
226 |
Q |
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|||||| |||||||||| |
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| T |
9918921 |
tcttttcctaaattttt |
9918905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 34872233 - 34872183
Alignment:
| Q |
187 |
gtgtctacatatgcatcacgagttcttttactaaattttttaactatgtgt |
237 |
Q |
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| T |
34872233 |
gtgtctacatatgcatcatgagttcttttcctaaaattttcaattatgtgt |
34872183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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