View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20124_low_1 (Length: 623)

Name: NF20124_low_1
Description: NF20124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20124_low_1
NF20124_low_1
[»] chr1 (5 HSPs)
chr1 (351-623)||(47832784-47833061)
chr1 (21-162)||(47833321-47833464)
chr1 (249-353)||(47833151-47833255)
chr1 (170-220)||(47833246-47833296)
chr1 (351-491)||(23351955-23352096)
[»] chr2 (2 HSPs)
chr2 (350-466)||(23999654-23999770)
chr2 (424-471)||(13308701-13308748)
[»] chr7 (2 HSPs)
chr7 (388-471)||(780867-780950)
chr7 (434-471)||(18309219-18309256)
[»] scaffold2108 (1 HSPs)
scaffold2108 (396-471)||(609-684)
[»] chr8 (2 HSPs)
chr8 (424-471)||(24117211-24117259)
chr8 (416-491)||(18976157-18976233)
[»] chr4 (1 HSPs)
chr4 (424-471)||(31815672-31815720)
[»] chr3 (1 HSPs)
chr3 (416-491)||(19805452-19805528)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 351 - 623
Target Start/End: Complemental strand, 47833061 - 47832784
Alignment:
Q  351 tggcgggataatttcttccatatgcatttactttctcacatttaaattctggcgtgctatttgatgagttatctccttttgttaatctcgcccttggtgg 450  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47833061 tggcgggataattttttccatatgcatttactttctcacatttaaattctggcgtgctatttgatgagttatctccttttgttaatctcgcccttggtgg 47832962  T
Q  451 gcttgtttgcatcccaaacttaatcatctcaaatataacaa-----caatacttccaaagtaatttgtatcctaaagaaaggagtcttaatcatatttaa 545  Q
    |||||||||||||||||||||||| |||| |||||||||||     | | ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  47832961 gcttgtttgcatcccaaacttaattatctgaaatataacaatacttccacacttccaaagtaattagtatcataaagaaaggagtcttaatcatatttaa 47832862  T
Q  546 tcatactttagttgaaactgacgactatttgtcattcctctaccaactcacccatattttctactcttcttcctattc 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47832861 tcatactttagttgaaactgacgactatttgtcattcctctaccaactcacccatattttcgactcttcttcctattc 47832784  T

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Target: chr1; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 47833464 - 47833321
Alignment:
Q  21 gcgagctaaatttttggctagtttctg--tttttacttgagtgctcggagagaatattttaacttgtttcgtggaagcatatttcttcgttgcatctctt 118  Q
    |||||||| ||||||| |||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47833464 gcgagctagatttttgcctagattctggttttttacttgagtgctcggagagaatattttaacttgtttcgtggaagcatatttcttcgttgcatctctt 47833365  T
Q  119 ttatttgacagaactttagtcttgttatttcagccacctttcca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  47833364 ttatttgacagaactttagtcttgttatttcagccacctttcca 47833321  T

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Target: chr1; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 249 - 353
Target Start/End: Complemental strand, 47833255 - 47833151
Alignment:
Q  249 ttagccgccttttacttggggaggctttgggcgacactcttttcttttggaggatacttgatgacagactggtgatttctttcttggaagggtgtttcct 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47833255 ttagccgccttttacttggggaggctttgggcgacactcttttcttttggaggatacatgatgacagactggtgatttctttcttggaagggtgtttcct 47833156  T
Q  349 tctgg 353  Q
    |||||    
T  47833155 tctgg 47833151  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 47833296 - 47833246
Alignment:
Q  170 atgggccatccctcctcataagagaggcattaggcagaatattagccgcct 220  Q
    |||||||  |||| |||||| ||||||||||||||||||||||||||||||    
T  47833296 atgggcccccccttctcataggagaggcattaggcagaatattagccgcct 47833246  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 491
Target Start/End: Complemental strand, 23352096 - 23351955
Alignment:
Q  351 tggcgggataatttcttccatatgcatttactttctcacatttaaattctggcgtgctatttgatgagttatctccttttgttaatctcgcccttggtgg 450  Q
    |||||||| ||||  ||||||||||||||  ||| |||| | |||||| ||||||  | |||  |||||| ||||||||||| ||| || ||||||   |    
T  23352096 tggcgggacaattgattccatatgcatttcgtttttcacctctaaattatggcgtattgtttagtgagttctctccttttgtcaatttcacccttgactg 23351997  T
Q  451 gcttgtttgcatcccaaactt-aatcatctcaaatataacaa 491  Q
     ||||||| |||||||||||| | | |||| |||||||||||    
T  23351996 acttgtttccatcccaaacttgatttatctgaaatataacaa 23351955  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 350 - 466
Target Start/End: Original strand, 23999654 - 23999770
Alignment:
Q  350 ctggcgggataatttcttccatatgcatttactttctcacatttaaattctggcgtgctatttgatgagttatctccttttgttaatctcgcccttggtg 449  Q
    ||||||| || ||| |||||||||||||||  ||||  ||||||||||  || |||| | |||||||  || ||| ||||  |||||||||||||||| |    
T  23999654 ctggcggtattattccttccatatgcattttttttcctacatttaaatcatgtcgtgttgtttgatggattctcttctttgtttaatctcgcccttggcg 23999753  T
Q  450 ggcttgtttgcatccca 466  Q
    |||||||||||||||||    
T  23999754 ggcttgtttgcatccca 23999770  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 471
Target Start/End: Original strand, 13308701 - 13308748
Alignment:
Q  424 tccttttgttaatctcgcccttggtgggcttgtttgcatcccaaactt 471  Q
    ||||||||||||||||| |||||| ||| |||||||| ||||||||||    
T  13308701 tccttttgttaatctcgtccttggcgggattgtttgcctcccaaactt 13308748  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 471
Target Start/End: Original strand, 780867 - 780950
Alignment:
Q  388 acatttaaattctggcgtgctatttgatgagttatctccttttgttaatctcgcccttggtgggcttgtttgcatcccaaactt 471  Q
    ||||||||||| ||||||| | |||||||  || ||| ||||  |||||||||||||||| |||||| ||||||||||||||||    
T  780867 acatttaaattatggcgtgttgtttgatggtttctcttctttgtttaatctcgcccttggcgggcttatttgcatcccaaactt 780950  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 471
Target Start/End: Complemental strand, 18309256 - 18309219
Alignment:
Q  434 aatctcgcccttggtgggcttgtttgcatcccaaactt 471  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  18309256 aatctcgcccttggcgggcttgtttgcctcccaaactt 18309219  T

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Target: scaffold2108 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold2108
Description:

Target: scaffold2108; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 471
Target Start/End: Complemental strand, 684 - 609
Alignment:
Q  396 attctggcgtgctatttgatgagttatctccttttgtt-aatctcgcccttggtgggcttgtttgcatcccaaactt 471  Q
    ||||||||||| | ||||||||||| | |||||||||| ||||||||| |||| || ||||||||| ||||||||||    
T  684 attctggcgtgttgtttgatgagttct-tccttttgtttaatctcgcctttggcggacttgtttgcctcccaaactt 609  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 471
Target Start/End: Complemental strand, 24117259 - 24117211
Alignment:
Q  424 tccttttgtt-aatctcgcccttggtgggcttgtttgcatcccaaactt 471  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  24117259 tccttttgtttaatctcgcccttggtgggtttgtttgcctcccaaactt 24117211  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 416 - 491
Target Start/End: Complemental strand, 18976233 - 18976157
Alignment:
Q  416 gagttatctccttttgttaatctcgcccttggtgggcttgtttgcatcccaaactt-aatcatctcaaatataacaa 491  Q
    ||||| ||||||||| || |||| |||||||| ||||||||| | ||||||||||| | | |||| |||||||||||    
T  18976233 gagttctctccttttattcatctagcccttggcgggcttgttagtatcccaaacttgatttatctgaaatataacaa 18976157  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 471
Target Start/End: Complemental strand, 31815720 - 31815672
Alignment:
Q  424 tccttttgtt-aatctcgcccttggtgggcttgtttgcatcccaaactt 471  Q
    |||||||||| |||||||||| ||| |||||||||||| ||||||||||    
T  31815720 tccttttgtttaatctcgcccgtggcgggcttgtttgcctcccaaactt 31815672  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 19805452 - 19805528
Alignment:
Q  416 gagttatctccttttgttaatctcgcccttggtgggcttgtttgcatcccaaactt-aatcatctcaaatataacaa 491  Q
    ||||| ||||||||| || |||| |||||||| ||||||||| | ||||||||||| | | |||| |||||||||||    
T  19805452 gagttctctccttttattcatctagcccttggcgggcttgttagtatcccaaacttgatttatctgaaatataacaa 19805528  T

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