View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20124_low_10 (Length: 264)
Name: NF20124_low_10
Description: NF20124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20124_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 6558265 - 6558521
Alignment:
| Q |
1 |
ttggaagggttatggagaaagagagaaaacaagagaaaggtataaggaaataggaggataagggaaatgaaagaagttttggactatatattgtgtgtga |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6558265 |
ttggaagggttatggagaaaaagagaaaacaagagaaaggtgtaaggaaataggaggataagggaaatgaaagaagttttggactatatattgtgtgtga |
6558364 |
T |
|
| Q |
101 |
agtttatgattttgctttgaattttaattgagtgg----nnnnnnnncttctttctataa---attagcaatgcttcatgttgttttcattgccattaat |
193 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
6558365 |
agtttatgatttttctttgaattttaattgagtggttttttttttcttttctttctataaaccattagcaatgcttcaagttgttttcatagccattaat |
6558464 |
T |
|
| Q |
194 |
agacttaaatattgtgtatcatgattcatgatatcttaccctttgtgatgttctctg |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6558465 |
agacttaaatattgtgtatcatgattcatgatatcttaccctttgtgatgttctctg |
6558521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University