View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20124_low_11 (Length: 254)
Name: NF20124_low_11
Description: NF20124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20124_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 34873213 - 34873441
Alignment:
| Q |
12 |
atgaaaactgttccaatgcactgagtaaacatgtaagtcatgtatctatttcatattttaactcgataaggccatttaacattgaaaaataaaattagga |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34873213 |
atgaaaaatgttccaatgcactgagtaaacatgtaagtcatgtatctatttcatattttaactcgataaggccatttaacattgaaaaataaaattagga |
34873312 |
T |
|
| Q |
112 |
ttttctaaataccaagtattatcgacacagaacatattcttactgtaaatcttgaagatatgtatgtta---aggagggtgtctacatatgcatcacgag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34873313 |
ttttctaaataccaagtattatcgacacagaacatattcttattgtaaatcttgaagctatgtatgttaattaggagggtgtctacatatgcatcacgag |
34873412 |
T |
|
| Q |
209 |
ttcttttactaaattttttaactatgtgt |
237 |
Q |
| |
|
|||||||| |||| ||||||| ||||||| |
|
|
| T |
34873413 |
ttcttttattaaaatttttaattatgtgt |
34873441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 9919137 - 9919035
Alignment:
| Q |
12 |
atgaaaactgttccaatgcactgagtaaacatgtaagtcatgtatctatttcatatttt-aactcgataaggccatttaacattgaaaaataaaattagg |
110 |
Q |
| |
|
||||||| |||||||||||||| || |||||||| | || || |||| ||||||||||| ||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
9919137 |
atgaaaattgttccaatgcactaaggaaacatgttaatcttgcatctgtttcatatttttaactcgacatggccatttaacattgaaaaataaaattagg |
9919038 |
T |
|
| Q |
111 |
att |
113 |
Q |
| |
|
||| |
|
|
| T |
9919037 |
att |
9919035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 34874885 - 34874950
Alignment:
| Q |
38 |
aaacatgtaagtcatgtatctatttcatattttaactcgataaggccatttaacattgaaaaataaaatta |
108 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
34874885 |
aaacatgttagtcatgtatctgtttcatattttaactc-----ggtcatttaacattgaaaaataaaatta |
34874950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 9919019 - 9918905
Alignment:
| Q |
113 |
tttctaaataccaagtattatcgacacagaacatat-tcttactgtaaatcttgaagatatgt--atgttaaggagggtgtctacatatgcatcacgagt |
209 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||| | || || |||||||||||||| ||||| ||||||||||||||||| ||||| || | ||| |
|
|
| T |
9919019 |
tttctgaataccgagtattattgacacagaacatgtatcatattgtaaatcttgaagctatgtgagtgttaaggagggtgtcttcatat--ataatcagt |
9918922 |
T |
|
| Q |
210 |
tcttttactaaattttt |
226 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
9918921 |
tcttttcctaaattttt |
9918905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 34872233 - 34872183
Alignment:
| Q |
187 |
gtgtctacatatgcatcacgagttcttttactaaattttttaactatgtgt |
237 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |||| || ||||||| |
|
|
| T |
34872233 |
gtgtctacatatgcatcatgagttcttttcctaaaattttcaattatgtgt |
34872183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University