View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20124_low_12 (Length: 251)
Name: NF20124_low_12
Description: NF20124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20124_low_12 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 6558085 - 6557850
Alignment:
| Q |
1 |
tcaaatgttaattcaattgagaaagaaaatttaccttcaacatctttgaaaaattgtgacatttttagtggtgagtgggtgccaaatccaaaaggaccat |
100 |
Q |
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| T |
6558085 |
tcaaatgttgattcaattgagaaagaaaatttaccttcaacatctttgaaaaattgtgacatttttagtggtgagtgggtgccaaatccaaaaggaccat |
6557986 |
T |
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| Q |
101 |
attatacaaacaaaacatgttgggcaattcatgagcatcaaaattgcatgaagtatggtaggccagattctgagttcatgaagtggagatggaagccaaa |
200 |
Q |
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| T |
6557985 |
attatacaaacaaaacatgttgggcaattcatgagcatcaaaattgcatgaaatatggtaggccagattctgagtttatgaagtggagatggaagccaaa |
6557886 |
T |
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| Q |
201 |
tgagtgtgaattaccaatttttaatccttttcaatt |
236 |
Q |
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| T |
6557885 |
tgagtgtgaactaccaattttcaatccttttcaatt |
6557850 |
T |
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Target: scaffold0929 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 198 - 59
Alignment:
| Q |
34 |
ccttcaacatctttgaaaaattgtgacatttttagtggtgagtgggtgccaaatccaaaaggaccatattatacaaacaaaacatgttgggcaattcatg |
133 |
Q |
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| T |
198 |
ccttcaacttctataaaaaagtgtgacattttcacaggtgagtgggttccaaatccaaaaggaccatattacacaaataaaacatgttgggcaattcatg |
99 |
T |
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| Q |
134 |
agcatcaaaattgcatgaagtatggtaggccagattctga |
173 |
Q |
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| T |
98 |
aacaccaaaattgtatgaagtatggaagaccagattctga |
59 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 173
Target Start/End: Complemental strand, 6368747 - 6368623
Alignment:
| Q |
49 |
aaaaattgtgacatttttagtggtgagtgggtgccaaatccaaaaggaccatattatacaaacaaaacatgttgggcaattcatgagcatcaaaattgca |
148 |
Q |
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| T |
6368747 |
aaaaagtgtgacatttttacaggtgaatgggttccaaatccaaaagcaccatattacacaaataaaacatgttgggcaattcatgaagaccaaaattgta |
6368648 |
T |
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| Q |
149 |
tgaagtatggtaggccagattctga |
173 |
Q |
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| T |
6368647 |
tgaagtatggaagaccagattctga |
6368623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 173
Target Start/End: Complemental strand, 6377212 - 6377088
Alignment:
| Q |
49 |
aaaaattgtgacatttttagtggtgagtgggtgccaaatccaaaaggaccatattatacaaacaaaacatgttgggcaattcatgagcatcaaaattgca |
148 |
Q |
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| T |
6377212 |
aaaaagtgtgacatttttacaggtgaatgggttccaaatccaaaagcaccatattacacaaataaaacatgttgggcaattcatgaagaccaaaattgta |
6377113 |
T |
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| Q |
149 |
tgaagtatggtaggccagattctga |
173 |
Q |
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| T |
6377112 |
tgaagtatggaagaccagattctga |
6377088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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