View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20124_low_13 (Length: 248)
Name: NF20124_low_13
Description: NF20124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20124_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 16911187 - 16910959
Alignment:
| Q |
7 |
tgctacgagcgaaggtgatccacaaaggcccatttcttgtaactccgaatctaagggtaccaggacgtggattcaccatgtcactatctgaggggtctgt |
106 |
Q |
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| T |
16911187 |
tgctacgagcgaaggtgatccacaaaggcccatttcttgtaactccgaatctaagggtaccaggacgtggattcaccatgtcactatctgaggggtctgt |
16911088 |
T |
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| Q |
107 |
taccacatagataggaccaccttttccaccagtagtcttccttccgaaacctttcacacaatctgcaagcttctggcggttgtttgcccagttaggatca |
206 |
Q |
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| T |
16911087 |
taccacatagataggaccgccttttccaccagtagtcttccttccgaaacctttcacacaatctgcaagcttctggcggttgtttgcccagttaggatca |
16910988 |
T |
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| Q |
207 |
cacctccaacacctgtcaatggggtttgt |
235 |
Q |
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| T |
16910987 |
cacctccaacacctgtcaatggggtttgt |
16910959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 16915592 - 16915363
Alignment:
| Q |
7 |
tgctacgagcgaaggtgatccacaaaggcccatttcttgtaactccgaatctaagggtaccaggacgtggattcaccatgtcactatctgaggggtctgt |
106 |
Q |
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| T |
16915592 |
tgctacgagcgaagatgatccacaaaggcccatttcttgtaactgcatgcctaagggtaccaggacgtggattcaccaagtcactatctgaggggtcagt |
16915493 |
T |
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| Q |
107 |
taccacatagataggaccaccttttccaccagtagtcttccttccgaaacctttcacacaatctgcaagcttctggcggttgtttgcccagttaggatca |
206 |
Q |
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| T |
16915492 |
taccacatagataggaccgtcttttccaccagtagtcttccttccaaaaccttgcacacaatctgcaagcttcttgcggttgtttgcccagttaggatca |
16915393 |
T |
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| Q |
207 |
cacctccaacacctgtcaatggggtttgtg |
236 |
Q |
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| T |
16915392 |
cacctccaacacctatcaatggggtttgtg |
16915363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 1872620 - 1872758
Alignment:
| Q |
7 |
tgctacgagcgaaggtgatccacaaaggcccatttcttgtaactccgaatctaagggtaccaggacgtggattcaccatgtcactatctgaggggtctgt |
106 |
Q |
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| T |
1872620 |
tgctacgagcgaaggtgatccacaaaggcccatttcttgtaactccgaatctaagggtaccaggacgtggattcaccatgtcactatctgaggggtctgt |
1872719 |
T |
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| Q |
107 |
taccacatagataggaccaccttttcc-accagtagtct |
144 |
Q |
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| T |
1872720 |
taccacatagataggaccgccttttccaaccagtagtct |
1872758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 1872756 - 1872789
Alignment:
| Q |
178 |
tctggcggttgtttgcccagttaggatcacacct |
211 |
Q |
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| T |
1872756 |
tctggcggttgtttgcgcagttaggatcacacct |
1872789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 25007554 - 25007643
Alignment:
| Q |
147 |
cttccgaaacctttcacacaatctgcaagcttctggcggttgtttgcccagttaggatcacacctccaacacctgtcaatggggtttgtg |
236 |
Q |
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| T |
25007554 |
cttccgaatccttggacacaatctgctagcttttggcggttgttagcccaatttgggtcacacctccagcatctgtcaataggatttgtg |
25007643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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