View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20124_low_2 (Length: 527)
Name: NF20124_low_2
Description: NF20124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20124_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 3e-71; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 292 - 514
Target Start/End: Original strand, 18097214 - 18097438
Alignment:
| Q |
292 |
agggaaaataaaaagtacttgttttatattaatattaattaaattaccttctctccnnnnnnnnnnnt--tttaattaaattatcactacaatnnnnnnn |
389 |
Q |
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| T |
18097214 |
agggaaaataaaaagtagttgttttatattaatattgattaaattaccttctctcaaaaaaaaaattaaattaaattaaattatcactacaataaaaaaa |
18097313 |
T |
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| Q |
390 |
ncacaatttactgaaacccttttactcctcctctgtcaatgtcatcatctactaatcgtccatggcagtttcatgggtgagaagtagcttcagttcatca |
489 |
Q |
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| T |
18097314 |
acacaatttactgaaacccttttactcctcctctgtcaatgtcatcatctactaatcgtccatggcagtttcatgggtgagaagtagcttcagttcatca |
18097413 |
T |
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| Q |
490 |
tattcgtttcttagtgatctctgct |
514 |
Q |
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||||||||||||||||||||||||| |
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| T |
18097414 |
tattcgtttcttagtgatctctgct |
18097438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 18097009 - 18097056
Alignment:
| Q |
236 |
aggggtttggtagatccatgttatatttatttttataaatggatagta |
283 |
Q |
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| T |
18097009 |
aggggtttggtagatccatgttatatttatttttataaatggatagta |
18097056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 18096939 - 18096973
Alignment:
| Q |
166 |
ataattttattcccattcccaaaataaaccgctag |
200 |
Q |
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| T |
18096939 |
ataattttattcccattcccaaaataaatcgctag |
18096973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 25885 - 25803
Alignment:
| Q |
19 |
acatgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtctaacacttgcgttttaacatgcatatga |
102 |
Q |
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| T |
25885 |
acatgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtc-agcacttgcgttttaacatgcatatga |
25803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 21352484 - 21352405
Alignment:
| Q |
22 |
tgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtctaacacttgcgttttaacatgcatatga |
102 |
Q |
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| T |
21352484 |
tgaacatttggtgtaaaaatgaaatgttttaagactatatgaataaaggtatc-aacacttgcgtcttaacatgcatatga |
21352405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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