View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20124_low_4 (Length: 470)
Name: NF20124_low_4
Description: NF20124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20124_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Complemental strand, 49696678 - 49696239
Alignment:
| Q |
19 |
gtgtagctgttttctaggtcatgatacccttaggtttatcagtattgtgggagttgcatgtcaattacttgcttttgtgtgtctgtcttcatttgcttga |
118 |
Q |
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| T |
49696678 |
gtgtagctgttttctaggtcatgatacccttaaatttatcagtattgtgggagttgcatgtcaattacttgcttttgtgtatcggtcttcatttgcttga |
49696579 |
T |
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| Q |
119 |
atatagttagcttgctcctgtttattgtgctctcaagtttgtgtgatctttactttgttgttaatgaaatttatttttctctggcaacatttacttttat |
218 |
Q |
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| T |
49696578 |
atatagttagcttgctcctgtttattgtgctctcaagtttgtgtgatctttactttgttgttaatgaaatttatttttctctggcaacatttactt--at |
49696481 |
T |
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| Q |
219 |
acctaacatgaatgatcatcttcggtaatctaatgctgaaaattcaattgtgtttttcattctcagaataagtttttgttaacatctgcttccatgccat |
318 |
Q |
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| T |
49696480 |
acctaacatgaatgatcatcttcagtaatctaatgctgaaaattcaattgtgtttttcattcttagaataagtttttgttaacatctgcttccatgccat |
49696381 |
T |
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| Q |
319 |
gagcttgtacacatatacatgttttaggtcgtcagcggtcactgtgctctgaaacatgtgattttagttcttatatcatataagtttttgttatcatctg |
418 |
Q |
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| T |
49696380 |
gagcttgtacacatatacatgttttaggtcgtcagcggtcactgtgatctgaaacatatgattttagttcttatatcatataagtttttgttatcatctg |
49696281 |
T |
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| Q |
419 |
cttgcatgctgtgagc-ttttacacatacatattttgttctt |
459 |
Q |
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| T |
49696280 |
cttgcatgctgtgagctttttacacatacatattttgttctt |
49696239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 390
Target Start/End: Complemental strand, 49696233 - 49696179
Alignment:
| Q |
336 |
catgttttaggtcgtcagcggtcactgtgctctgaaacatgtgattttagttctt |
390 |
Q |
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|||||||| ||| ||||||||||| |||| |||||||| ||| |||||||||||| |
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| T |
49696233 |
catgtttttggttgtcagcggtcattgtgatctgaaacctgtaattttagttctt |
49696179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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