View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20124_low_5 (Length: 445)
Name: NF20124_low_5
Description: NF20124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20124_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 33309167 - 33308746
Alignment:
| Q |
19 |
gcattcgtattggtagtaatgtcacacaaccgttgaaggaactcgatattcaatttacattagtgtcatggtttaaacctccaaaatcatagcatcttgg |
118 |
Q |
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| T |
33309167 |
gcattcgtattgatagtaatgccacacaaccgctgaaggaactcgatatccaatttacattggtgtcatggtttaaaccttcaaaatcatagcgtcttgg |
33309068 |
T |
|
| Q |
119 |
attcctaagagagttatcatcaacatttaatttaattgtttccttgatggaggttttcaaacaaccaagtgaggttccatgtatgtaatatcggaatccg |
218 |
Q |
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||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
33309067 |
attactaagagagttaccatcaacatttaatttaattgtttccttggtggaggttttcaaacaaccaagcgaggttccctgtatgtaatatcggaatccg |
33308968 |
T |
|
| Q |
219 |
agctcctaatagttgcttc----ataatgtgtaataattag---------ttcctagtctcctcatgtagtgttagaaaaagctcttcgttacgagcttt |
305 |
Q |
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| T |
33308967 |
agctcttaatagttgtttcatatataatgtgtaataattagattgaaaacttcctagtctccccatgtagtgttagaaaaaactcttcgttacaaacttt |
33308868 |
T |
|
| Q |
306 |
cgaaatgaaccaacaagcaatcaaaaagagttgtccatcttgctcggaagcaaattgattaattgaattataacatttagacatcataaagatttaagaa |
405 |
Q |
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||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||| |||||||||| ||||| |||||||||||||| |
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| T |
33308867 |
cgatatgaaccaacaagcaatcaaaaatagttgttcatcttgctcggaagcaaaatgattaatcgaatcataacatttaaacatcgtaaagatttaagaa |
33308768 |
T |
|
| Q |
406 |
ttatgaaaatacaacgtattcc |
427 |
Q |
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|||||||||||||||||||||| |
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| T |
33308767 |
ttatgaaaatacaacgtattcc |
33308746 |
T |
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