View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20124_low_7 (Length: 355)

Name: NF20124_low_7
Description: NF20124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20124_low_7
NF20124_low_7
[»] chr5 (10 HSPs)
chr5 (1-345)||(29954177-29954523)
chr5 (130-324)||(22708208-22708405)
chr5 (1-127)||(29965445-29965571)
chr5 (1-127)||(30009227-30009353)
chr5 (12-127)||(29945255-29945373)
chr5 (175-214)||(17589550-17589589)
chr5 (281-327)||(12567190-12567236)
chr5 (1-51)||(29995935-29995985)
chr5 (1-50)||(30043224-30043273)
chr5 (175-224)||(32560638-32560687)
[»] chr4 (7 HSPs)
chr4 (130-346)||(7690356-7690573)
chr4 (130-324)||(1290425-1290624)
chr4 (130-331)||(51267553-51267746)
chr4 (170-216)||(7784902-7784948)
chr4 (299-345)||(7784990-7785036)
chr4 (175-257)||(21121837-21121918)
chr4 (175-221)||(51702234-51702280)
[»] chr2 (6 HSPs)
chr2 (130-346)||(31055628-31055844)
chr2 (130-343)||(25221828-25222045)
chr2 (142-345)||(16267295-16267499)
chr2 (175-256)||(35658371-35658453)
chr2 (175-215)||(19182355-19182395)
chr2 (175-223)||(38002210-38002258)
[»] chr6 (4 HSPs)
chr6 (138-345)||(1717396-1717604)
chr6 (177-223)||(6257522-6257568)
chr6 (170-222)||(31946476-31946528)
chr6 (170-228)||(3707189-3707247)
[»] chr3 (3 HSPs)
chr3 (199-328)||(6042908-6043040)
chr3 (240-325)||(35695367-35695453)
chr3 (286-330)||(41907343-41907387)
[»] chr1 (7 HSPs)
chr1 (175-329)||(26924824-26924978)
chr1 (281-331)||(31481277-31481327)
chr1 (175-214)||(30052438-30052477)
chr1 (276-333)||(18650145-18650201)
chr1 (175-228)||(23043648-23043701)
chr1 (175-215)||(18650264-18650304)
chr1 (285-321)||(30052330-30052366)
[»] scaffold0178 (1 HSPs)
scaffold0178 (174-223)||(9324-9373)
[»] chr7 (2 HSPs)
chr7 (175-228)||(27900038-27900091)
chr7 (278-318)||(22543197-22543237)
[»] chr8 (2 HSPs)
chr8 (175-215)||(10659016-10659056)
chr8 (170-222)||(41566476-41566527)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 29954177 - 29954523
Alignment:
Q  1 tcactataccaagagctcaacacttgcatgcattaccgacttatcgtttggcatgtgatgacagggttgaataggttcaagaaggacaatattatgcttg 100  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29954177 tcactataccaagagctcaacacttgcatgtaataccgacttatcgtttggcatgtgatgacagggttgaataggttcaagaaggacaatattatgcttg 29954276  T
Q  101 tatgcaataagtttattactat--taaaggacaatcttaaaaccctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatc 198  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29954277 tatgcaataagtttattactatattaaaggacaatcttaaaaccctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatc 29954376  T
Q  199 cgtacgcgggttcgctggattgcgctcgtggtgagagttagtttgttaggattgattagggtagtttcatttttctgttttacacgatgtatttccgttt 298  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29954377 cgtacgcgggttcgctggattgcgctcatggtgagagttagtttgttaggattgattagggtagtttcatttttctgttttacacgatgtatttccgttt 29954476  T
Q  299 gggttatttctgggtcaggtccaatgtccccccagctctttaccttt 345  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  29954477 gggttatttctgggtcaggtgcaatgtccccccagctctttaccttt 29954523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 130 - 324
Target Start/End: Original strand, 22708208 - 22708405
Alignment:
Q  130 caatcttaaaaccctcttttattctactaaccctctctcatcatgtt--ttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgt 227  Q
    |||| ||||||||||||||||| ||| |    ||||||| |||||||  |||||||||||||||| || | |||||||||||||||||| ||||||||||    
T  22708208 caattttaaaaccctcttttatcctaatgttgctctctcgtcatgttatttttgtaacttggttttgatttcgtacgcgggttcgctgggttgcgctcgt 22708307  T
Q  228 ggtgagagttag-tttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaatg 324  Q
      ||| |||| | |||||||| |||||||| | | ||||| ||||| ||||||| |||||||||| |||| |||||||||||||||| ||| |||||||    
T  22708308 aatgaaagtttgttttgttagaattgattatgatcgtttc-tttttatgttttaccacgatgtatctccgattgggttatttctgggccagatccaatg 22708405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 29965445 - 29965571
Alignment:
Q  1 tcactataccaagagctcaacacttgcatgcattaccgacttatcgtttggcatgtgatgacagggttgaataggttcaagaaggacaatattatgcttg 100  Q
    ||||||||||||| |||||||| ||||| ||| |||||| ||||||||||| ||||||||| | | |||||||||| ||  ||||||| |||||||||||    
T  29965445 tcactataccaagggctcaacatttgcacgcaataccgagttatcgtttggaatgtgatgagaagcttgaataggtccataaaggacattattatgcttg 29965544  T
Q  101 tatgcaataagtttattactattaaag 127  Q
    ||| ||| ||||||||||||| |||||    
T  29965545 tattcaacaagtttattactagtaaag 29965571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 30009353 - 30009227
Alignment:
Q  1 tcactataccaagagctcaacacttgcatgcattaccgacttatcgtttggcatgtgatgacagggttgaataggttcaagaaggacaatattatgcttg 100  Q
    ||||||||||||| |||||||| ||||| ||| |||||| ||||||||||| ||||||||| | | |||||||||| ||  ||||||| |||||||||||    
T  30009353 tcactataccaagggctcaacatttgcacgcaataccgagttatcgtttggaatgtgatgagaagcttgaataggtccataaaggacattattatgcttg 30009254  T
Q  101 tatgcaataagtttattactattaaag 127  Q
    ||| ||| ||||||||||||| |||||    
T  30009253 tattcaacaagtttattactagtaaag 30009227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 29945255 - 29945373
Alignment:
Q  12 agagctcaacacttgcatgcattaccgacttatcgtttggcatgtgatgacagggttgaatag--gtt-caagaaggacaatattatgcttgtatgcaat 108  Q
    |||||||||||||| || ||| |||| | ||||||||||||| |||||| || | ||||||||  ||| ||||| ||||||||||||| ||| || |||     
T  29945255 agagctcaacacttacacgcaataccaagttatcgtttggcaggtgatggcaagcttgaatagtagttccaagagggacaatattatgtttgcattcaac 29945354  T
Q  109 aagtttattactattaaag 127  Q
    ||| ||||||||| |||||    
T  29945355 aaggttattactagtaaag 29945373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 17589589 - 17589550
Alignment:
Q  175 ttttttgtaacttggtttcgaatccgtacgcgggttcgct 214  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  17589589 ttttttgtaacttggtttcgcacccgtacgcgggttcgct 17589550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 327
Target Start/End: Original strand, 12567190 - 12567236
Alignment:
Q  281 cacgatgtatttccgtttgggttatttctgggtcaggtccaatgtcc 327  Q
    |||| ||||||||||||| ||||||| |||| |||||||||||||||    
T  12567190 cacgttgtatttccgtttcggttattcctggatcaggtccaatgtcc 12567236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29995935 - 29995985
Alignment:
Q  1 tcactataccaagagctcaacacttgcatgcattaccgacttatcgtttgg 51  Q
    |||||||||||||| ||||||| ||||||||| |||| | |||||||||||    
T  29995935 tcactataccaagaactcaacatttgcatgcaataccaagttatcgtttgg 29995985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30043273 - 30043224
Alignment:
Q  1 tcactataccaagagctcaacacttgcatgcattaccgacttatcgtttg 50  Q
    ||||||||||||||||||| || ||||| ||| |||||| ||||||||||    
T  30043273 tcactataccaagagctcagcatttgcacgcaataccgagttatcgtttg 30043224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 32560638 - 32560687
Alignment:
Q  175 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgct 224  Q
    ||||||||||  ||||||||   |||||||||||||||||||||||||||    
T  32560638 ttttttgtaatctggtttcgcgcccgtacgcgggttcgctggattgcgct 32560687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 166; Significance: 9e-89; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 130 - 346
Target Start/End: Complemental strand, 7690573 - 7690356
Alignment:
Q  130 caatcttaaaaccctcttttattctactaaccctctctcatcatgttttttgt-aacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtg 228  Q
    |||||||||||||||||||||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| ||| |||||| ||||    
T  7690573 caatcttaaaaccctcttttattctaccgaccctctctcatcatcttttttgttaacttggtttcgaatccgtacgctggttcgttgggttgcgcccgtg 7690474  T
Q  229 gtgagagttagtttgttaggattgattagggtagtttcatttttctgttttacacgatgtatttccgtttgggttatttctgggtcaggtccaatgtccc 328  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  7690473 gtgagagttcgtttgttaggattgattagggtagtttcatttttctgttttacacgttgtatctccgtttgggttatttctgggtcaggtccaatgtccc 7690374  T
Q  329 cccagctctttacctttg 346  Q
    ||||||||| ||||||||    
T  7690373 cccagctctgtacctttg 7690356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 130 - 324
Target Start/End: Complemental strand, 1290624 - 1290425
Alignment:
Q  130 caatcttaaaaccctcttttattctactaaccctctctcatcatg----ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctc 225  Q
    |||| ||||||||||||||||| ||| |    ||||||| |||||    ||||||||||||||||||||| ||||||||| |||||||||| |||| |||    
T  1290624 caattttaaaaccctcttttatcctaatgttgctctctcgtcatgttttttttttgtaacttggtttcgattccgtacgcaggttcgctgggttgctctc 1290525  T
Q  226 gtggtgagagttag-tttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaat 323  Q
    ||| ||| |||| | ||||||||||||||||||  | ||||| ||||| ||||||| ||| |||||| |||| |||||||||||||||||||||||||||    
T  1290524 gtgatgaaagtttgttttgttaggattgattagaattgtttc-tttttatgttttaccacaatgtatctccgattgggttatttctgggtcaggtccaat 1290426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 331
Target Start/End: Original strand, 51267553 - 51267746
Alignment:
Q  130 caatcttaaaaccctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtgg 229  Q
    |||||| |||||||| |||||| ||| | || | ||||  |||| |||||||||||||||||||||   ||||| | | |||||||| |||||| ||||     
T  51267553 caatctaaaaacccttttttatcctattgacgccctcttgtcatcttttttgtaacttggtttcgag--cgtacacagtttcgctgggttgcgcccgtga 51267650  T
Q  230 tgagagttagtttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaatgtccc 328  Q
    ||| |||| |||||||||||||||||||||| |       ||||||||||| ||||||||||| ||  ||||||||||||||||||||||| |||| |||    
T  51267651 tgatagttcgtttgttaggattgattagggtcg-------tttctgttttatcacgatgtattcccaattgggttatttctgggtcaggtctaatgcccc 51267743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 7784902 - 7784948
Alignment:
Q  170 tcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctgg 216  Q
    |||| |||||||||||||||||||||   ||||||||||||||||||    
T  7784902 tcatcttttttgtaacttggtttcgagctcgtacgcgggttcgctgg 7784948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 345
Target Start/End: Original strand, 7784990 - 7785036
Alignment:
Q  299 gggttatttctgggtcaggtccaatgtccccccagctctttaccttt 345  Q
    ||||||||||||||||||||| |||||||||||| | || |||||||    
T  7784990 gggttatttctgggtcaggtctaatgtccccccatcgctgtaccttt 7785036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 21121837 - 21121918
Alignment:
Q  175 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtggtgagagttagtttgttaggattgattag 257  Q
    |||||||||||||||| ||| | ||||| ||||||||||||| ||||||| ||| | ||  ||| ||||||||||| ||||||    
T  21121837 ttttttgtaacttggtctcgcacccgtatgcgggttcgctgggttgcgctagtgattag-tttattttgttaggatagattag 21121918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 51702234 - 51702280
Alignment:
Q  175 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgc 221  Q
    |||||||||| | |||||||||||| |||| ||||||||||||||||    
T  51702234 ttttttgtaattcggtttcgaatccatacgtgggttcgctggattgc 51702280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 130 - 346
Target Start/End: Original strand, 31055628 - 31055844
Alignment:
Q  130 caatcttaaaaccctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtgg 229  Q
    ||||||||||||||||||||||||||||  |||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  31055628 caatcttaaaaccctcttttattctactggccctctttcatcatcttttttgtaacttggtttcgaatccgtacgctggttcgttgggttgcgctcgtgg 31055727  T
Q  230 tgagagttagtttgttaggattgattagggtagtttcatttttctgttttacacgatgtatttccgtttgggttatttctgggtcaggtccaatgtcccc 329  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||    
T  31055728 tgagagttcgtttgttaggattgattagggtagtttcatttttttgttttaaacgatgtatctccgtttgggttatttttgggtcaggtccaatgttccc 31055827  T
Q  330 ccagctctttacctttg 346  Q
    |||||||| ||||||||    
T  31055828 ccagctctgtacctttg 31055844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 130 - 343
Target Start/End: Original strand, 25221828 - 25222045
Alignment:
Q  130 caatcttaaaaccctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtgg 229  Q
    |||||| |||||| | || ||| ||||| || ||||||| || | |||||||||||||||||||||||||||||||||||||||||| ||||||   ||     
T  25221828 caatctaaaaaccattttgtatcctactgacgctctctcgtcgtcttttttgtaacttggtttcgaatccgtacgcgggttcgctgggttgcgcctatga 25221927  T
Q  230 tgagagttag-tttgttaggattgattagggtagtttcatttttctgtttta---cacgatgtatttccgtttgggttatttctgggtcaggtccaatgt 325  Q
    |||||||| | ||||||||||||||||||||| ||||| ||||| | | |||   ||||||||||  || ||||||||||||| |||||||||| |||||    
T  25221928 tgagagttcgttttgttaggattgattagggtcgtttcttttttttctattatatcacgatgtatccccatttgggttatttccgggtcaggtctaatgt 25222027  T
Q  326 ccccccagctctttacct 343  Q
    ||||| |||||| |||||    
T  25222028 cccccaagctctctacct 25222045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 345
Target Start/End: Original strand, 16267295 - 16267499
Alignment:
Q  142 cctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtggtgagagtt-agt 240  Q
    ||||||| || ||||| |||||| ||| |||| |||||||||||||  |||||   |||||||||| ||| ||||||||| | |||| |||||||| | |    
T  16267295 cctctttcatcctactgaccctcactcgtcatcttttttgtaacttaatttcgtgcccgtacgcggattcactggattgcacccgtgatgagagttcatt 16267394  T
Q  241 ttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaatgtccccccagctcttt 339  Q
    ||||||||||| |||||||| ||||| |||| |||||||| || |||||||   || ||| |||||||||| |||| ||||||||| ||| ||||||| |    
T  16267395 ttgttaggatttattagggtcgtttctttttactgttttatcatgatgtatcctcggttgagttatttctgtgtcaagtccaatgt-ccctcagctctgt 16267493  T
Q  340 accttt 345  Q
    ||||||    
T  16267494 accttt 16267499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 35658371 - 35658453
Alignment:
Q  175 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtggtgagagttagtttg-ttaggattgatta 256  Q
    ||||||||||||||||||||  |||||||||||||||||| | ||||||| |||  ||| ||| ||||| |||||||||||||    
T  35658371 ttttttgtaacttggtttcgcgtccgtacgcgggttcgctaggttgcgcttgtgaggagtgttggtttgattaggattgatta 35658453  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 19182355 - 19182395
Alignment:
Q  175 ttttttgtaacttggtttcgaatccgtacgcgggttcgctg 215  Q
    |||||||||||||||||||| | ||||||||||||| ||||    
T  19182355 ttttttgtaacttggtttcgcacccgtacgcgggtttgctg 19182395  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 38002210 - 38002258
Alignment:
Q  175 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgc 223  Q
    ||||||||||||||||||||   ||||||||||||| ||||| ||||||    
T  38002210 ttttttgtaacttggtttcgcgcccgtacgcgggtttgctgggttgcgc 38002258  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 138 - 345
Target Start/End: Complemental strand, 1717604 - 1717396
Alignment:
Q  138 aaaccctcttttattctactaaccctctctcatcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtggtgagagtt 237  Q
    |||||| || |||| ||||| || |||| || |||| ||||||||||||||||||||| |||||||||||| ||||||| |||||   ||| ||||||||    
T  1717604 aaacccgctcttatcctactgacactctttcgtcatattttttgtaacttggtttcgagtccgtacgcgggatcgctgggttgcgtctgtgatgagagtt 1717505  T
Q  238 ag-tttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaatgtccccccagct 335  Q
     | ||||||||||||| ||||||||||||| |||| | |||||| ||||||||||| || |||||||||||||||||||||| || ||| ||||| ||||    
T  1717504 cgttttgttaggattgtttagggtagtttctttttacggttttatcacgatgtattcccttttgggttatttctgggtcaggcccgatg-ccccctagct 1717406  T
Q  336 ctttaccttt 345  Q
    || |||||||    
T  1717405 ctgtaccttt 1717396  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 6257522 - 6257568
Alignment:
Q  177 ttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgc 223  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||    
T  6257522 ttttgtaacttggtttcgcacccgtacgcgggttcgctgggttgcgc 6257568  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 31946476 - 31946528
Alignment:
Q  170 tcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcg 222  Q
    |||| ||||||||||||||||||||   ||||||||||||||||||| |||||    
T  31946476 tcatattttttgtaacttggtttcgcgcccgtacgcgggttcgctgggttgcg 31946528  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 3707247 - 3707189
Alignment:
Q  170 tcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtg 228  Q
    |||| |||||||||||| ||||||| ||||||| | ||||| ||||| |||||||||||    
T  3707247 tcatcttttttgtaactcggtttcgcatccgtatgtgggtttgctgggttgcgctcgtg 3707189  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 328
Target Start/End: Complemental strand, 6043040 - 6042908
Alignment:
Q  199 cgtacgcgggttcgctggattgcgctcgtg-gtgagagttag-tttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccg 295  Q
    |||| |||||||||||||||||||| |||| ||||| ||| | ||||||||||||||||||||| | ||   |  ||| ||||| |||| ||||| ||||    
T  6043040 cgtatgcgggttcgctggattgcgcccgtgtgtgagtgtttgttttgttaggattgattagggttgattgcatggtctattttatcacgttgtatctccg 6042941  T
Q  296 tttgggttatttctgggtcaggtccaatgtccc 328  Q
    |||||||| | ||||||||||||| ||||||||    
T  6042940 tttgggttgtatctgggtcaggtctaatgtccc 6042908  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 35695367 - 35695453
Alignment:
Q  240 tttgttaggattgattagggtagtttcatttttctgtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaatgt 325  Q
    ||||||||||||||||||||| |||||| |||  ||||||| |||||||||||  |  |||||||  || ||||||||||| |||||    
T  35695367 tttgttaggattgattagggttgtttcactttaatgttttatcacgatgtattctccattgggttgattttgggtcaggtctaatgt 35695453  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 41907343 - 41907387
Alignment:
Q  286 tgtatttccgtttgggttatttctgggtcaggtccaatgtccccc 330  Q
    ||||||| ||||||||||||| ||||||||||||  |||||||||    
T  41907343 tgtattttcgtttgggttattcctgggtcaggtctgatgtccccc 41907387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 329
Target Start/End: Complemental strand, 26924978 - 26924824
Alignment:
Q  175 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtggtgagagttagtttgttaggattgattagggtagtttcatttttct 274  Q
    |||||||||| |||||||||  |||||||||||||| ||||||||||||| ||| | || |  | |||||||| || |||||| |||| | ||||   ||    
T  26924978 ttttttgtaatttggtttcgtgtccgtacgcgggtttgctggattgcgcttgtgattagtg-aattttgttagaatagattagagtagatccattggact 26924880  T
Q  275 gtttta-cacgatgtatttccgtttgggttatttctgggtcaggtccaatgtcccc 329  Q
    | |||| |||||||||||| | |||||||||||| || |||||||  |||||||||    
T  26924879 gatttatcacgatgtattttcatttgggttatttttgagtcaggtttaatgtcccc 26924824  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 331
Target Start/End: Complemental strand, 31481327 - 31481277
Alignment:
Q  281 cacgatgtatttccgtttgggttatttctgggtcaggtccaatgtcccccc 331  Q
    |||||||||| ||||| ||||||||| |||||||||||| |||||||||||    
T  31481327 cacgatgtatctccgtctgggttattcctgggtcaggtctaatgtcccccc 31481277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 30052477 - 30052438
Alignment:
Q  175 ttttttgtaacttggtttcgaatccgtacgcgggttcgct 214  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  30052477 ttttttgtaacttggtttcgcattcgtacgcgggttcgct 30052438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 18650201 - 18650145
Alignment:
Q  276 ttttacacgatgtatttccgtttgggttatttctgggtcaggtccaatgtccccccag 333  Q
    |||| ||||||||||||||||||| ||| || | ||||||||||| ||||||||||||    
T  18650201 tttttcacgatgtatttccgtttgagtt-ttcccgggtcaggtcctatgtccccccag 18650145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 23043648 - 23043701
Alignment:
Q  175 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtg 228  Q
    ||||||||||||| ||||||   ||||| ||||||||||||| |||||||||||    
T  23043648 ttttttgtaacttagtttcgtgcccgtatgcgggttcgctgggttgcgctcgtg 23043701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 18650304 - 18650264
Alignment:
Q  175 ttttttgtaacttggtttcgaatccgtacgcgggttcgctg 215  Q
    ||||||||||||||||||||   ||||||||||||||||||    
T  18650304 ttttttgtaacttggtttcgcgcccgtacgcgggttcgctg 18650264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 30052366 - 30052330
Alignment:
Q  285 atgtatttccgtttgggttatttctgggtcaggtcca 321  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  30052366 atgtattcccgtttgggttattcctgggtcaggtcca 30052330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 9373 - 9324
Alignment:
Q  174 gttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgc 223  Q
    ||||||||||||||||||||| | ||||||||||||||||| | ||||||    
T  9373 gttttttgtaacttggtttcgcacccgtacgcgggttcgctaggttgcgc 9324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 27900091 - 27900038
Alignment:
Q  175 ttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcgctcgtg 228  Q
    ||||||||||||||||||||   ||||||||||||| |||||||||||| ||||    
T  27900091 ttttttgtaacttggtttcgctcccgtacgcgggtttgctggattgcgcccgtg 27900038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 22543197 - 22543237
Alignment:
Q  278 ttacacgatgtatttccgtttgggttatttctgggtcaggt 318  Q
    ||||||||||||||  ||||||||||||| |||||||||||    
T  22543197 ttacacgatgtattctcgtttgggttattcctgggtcaggt 22543237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 10659056 - 10659016
Alignment:
Q  175 ttttttgtaacttggtttcgaatccgtacgcgggttcgctg 215  Q
    ||||||||||| |||||||||| ||||||||||||||||||    
T  10659056 ttttttgtaacctggtttcgaacccgtacgcgggttcgctg 10659016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 41566476 - 41566527
Alignment:
Q  170 tcatgttttttgtaacttggtttcgaatccgtacgcgggttcgctggattgcg 222  Q
    |||| ||||||||||||||||||||   |||||||||||||||||||||||||    
T  41566476 tcatattttttgtaacttggtttcgcg-ccgtacgcgggttcgctggattgcg 41566527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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