View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20125_high_13 (Length: 345)
Name: NF20125_high_13
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 34174009 - 34174324
Alignment:
| Q |
13 |
aatatcataaggaagacaaacttgaatatcaatactaccttcttccgccccaccaaatatagtaactttaccaatannnnnnngaagtccaaccccattc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
34174009 |
aatatcataaggaagacaaacttgaatatcaatactaccttcttccgccccacaaaatatagtaactttaccgatatttttttgaagtccaaccccattc |
34174108 |
T |
|
| Q |
113 |
ctaactgcaattggcttaccccaaccaaagtcattaccataaaaatcaaatcttggggaattacttactaaatacacattagtacttcttaacatacctg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34174109 |
ctaactgcaattggcttaccccaaccaaagtcattaccataaaaatcaaatcttggggaattacttactaaatacacattactacttcttaacatacctg |
34174208 |
T |
|
| Q |
213 |
cctctcctataatcggtgttttcaaccaagactcgtagttattcattaccttctcatgatgagattccttagaaatcatcttgttcatttccatagcaac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34174209 |
cctctcctataatcggtgttttcaaccaagactcgtagttattcattaccttctcatgatgagattccttagaaatcatcttgttcatttccatagcagc |
34174308 |
T |
|
| Q |
313 |
cttaccaatcccacct |
328 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
34174309 |
cttaccaataccacct |
34174324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 13 - 326
Target Start/End: Original strand, 39075115 - 39075425
Alignment:
| Q |
13 |
aatatcataaggaagacaaacttgaatatcaatactaccttcttccgccccaccaaatatagtaactttaccaatannnnnnngaagtccaaccccattc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| | ||||||| | | ||||| |||||||| ||||||||| ||||| |
|
|
| T |
39075115 |
aatatcataaggaagacaaacttgaatatcaacactaccttcttcttcaccaccaagcacaataactctaccaatatttcttttaagtccaacaccattt |
39075214 |
T |
|
| Q |
113 |
ctaactgcaattggcttaccccaaccaaagtcattaccataaaaatcaaatcttggggaattacttactaaatacacattagtacttcttaacatacctg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||| ||| || | ||| ||| | ||| ||| ||| |||| ||| | | |||||| |
|
|
| T |
39075215 |
ctaactgcaattggcttaccccaaccaaagtcattgccgtaataattgaaccgtggtgaactgcttgctatcaacaaatta---cttgatgatctacctg |
39075311 |
T |
|
| Q |
213 |
cctctcctataatcggtgttttcaaccaagactcgtagttattcattaccttctcatgatgagattccttagaaatcatcttgttcatttccatagcaac |
312 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||| |||||||||||||||||||| |
|
|
| T |
39075312 |
cctccggtatagacggggttttcaaccaagactcatagttattcactaccttctcatgatgagattgtatagatatcaccttgttcatttccatagcaat |
39075411 |
T |
|
| Q |
313 |
cttaccaatcccac |
326 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39075412 |
tttaccaatcccac |
39075425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 7398364 - 7398501
Alignment:
| Q |
13 |
aatatcataaggaagacaaacttgaatatcaatactaccttcttccgccccaccaaatatagtaactttaccaatannnnnnngaagtccaaccccattc |
112 |
Q |
| |
|
||||| |||||||| | |||||| ||||||||||||||||||||| ||||||||| | | ||||| |||||||| ||||||||| ||||| |
|
|
| T |
7398364 |
aatattataaggaaaagaaacttcaatatcaatactaccttcttcttccccaccaagcacattaactataccaatatttcttttaagtccaacaccattt |
7398463 |
T |
|
| Q |
113 |
ctaactgcaattggcttaccccaaccaaagtcattacc |
150 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7398464 |
ctaactgcaataggcttaccccaaccgaagtcattacc |
7398501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 39097685 - 39097737
Alignment:
| Q |
125 |
ggcttaccccaaccaaagtcattaccataaaaatcaaatcttggggaattact |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||| ||| |||| |
|
|
| T |
39097685 |
ggcttaccccaaccaaagtcattaccataaacatcaaaccttggagaactact |
39097737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 7398603 - 7398674
Alignment:
| Q |
255 |
tcattaccttctcatgatgagattccttagaaatcatcttgttcatttccatagcaaccttaccaatcccac |
326 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
7398603 |
tcattatcttctcatgatgagattttgatgaaatctccttgttcatttccatagcaattttaccaatcccac |
7398674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 39097576 - 39097620
Alignment:
| Q |
13 |
aatatcataaggaagacaaacttgaatatcaatactaccttcttc |
57 |
Q |
| |
|
||||||||||| ||| ||||||| || |||||||||||||||||| |
|
|
| T |
39097576 |
aatatcataagaaaggcaaacttcaacatcaatactaccttcttc |
39097620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 8936319 - 8936279
Alignment:
| Q |
17 |
tcataaggaagacaaacttgaatatcaatactaccttcttc |
57 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
8936319 |
tcatatggaagacaaacttgaaggtcaatactaccttcttc |
8936279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University