View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20125_high_16 (Length: 310)
Name: NF20125_high_16
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_high_16 |
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| [»] scaffold1630 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 26948377 - 26948658
Alignment:
| Q |
17 |
aaagatgttggtcatagtcatgttggtccttttcacactcatgctcttcaacgaagtttggttgatgcttatttttgctgtagcagtccttctccacatg |
116 |
Q |
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| T |
26948377 |
aaagatgttggtcatagtcatgttggtccttttcacactcatgctcttcaacgaagtttgcttgatgcttatttttgctgtaacagtccttctccacatg |
26948476 |
T |
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| Q |
117 |
tccaaatttcttacagtgtccacattgtggttttccgcgccatcgacaatatttctcggcatgatttgtcctcttgcatatgccacatggaggataatca |
216 |
Q |
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| T |
26948477 |
tccgaatttcttacagtatgcacattgtggttttccgcgccatcgacaatatttctcggcatga-ttgttctcttgcatatgccacatggaggataatca |
26948575 |
T |
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| Q |
217 |
tcttgannnnnnnnngagaaatttctagaaaaatctttgtttctagaattttctccacttttcttgtttcctccaaatccttt |
299 |
Q |
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| T |
26948576 |
tcttgatttttctttgagaaatttctagaaaattctttgtttcttgaattttctccacttttcttgtttcctccaaatccttt |
26948658 |
T |
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Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 20508132 - 20508320
Alignment:
| Q |
20 |
gatgttggtcatagtcatgttggtccttttcacactcatgctcttcaacgaagtttggttgatgcttatttttgctgtagcagtccttctccacatgtcc |
119 |
Q |
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| T |
20508132 |
gatgttgttcatagtcacgttaatccttctcatactcatgctcttcaatggagttttcttgatgcttatttttgttgtagcagttcttccccaaatgttc |
20508231 |
T |
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| Q |
120 |
aaatttcttacagtgtccacattgtggttttccgcgccatcgacaatatttctcggcatgatttgtcctcttgcatatgccacatggag |
208 |
Q |
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| T |
20508232 |
aaattttttatagtgtccacattgtggttttctgcgccattgacaatatttctcggcatgatctgtcttcttgcatattccacatggag |
20508320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1630 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1630
Description:
Target: scaffold1630; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 299
Target Start/End: Complemental strand, 1224 - 1030
Alignment:
| Q |
105 |
cttctccacatgtccaaatttcttacagtgtccaca-ttgtggttttccgcgccatcgacaatatttctcggcatgatttgtcctcttgcatatgccaca |
203 |
Q |
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|||||||||||||| || ||||||| |||||| ||| || ||||||| | ||||| |||| | |||||||||| |||||||| ||| |||||||| ||| |
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| T |
1224 |
cttctccacatgtctaactttcttatagtgtctacatttttggtttttcatgccattgacattttttctcggcaagatttgtcttctcgcatatgctaca |
1125 |
T |
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| Q |
204 |
tggaggataatcatcttgannnnnnnnngagaaatttctagaaaaatctttgtttctagaattttctccacttttcttgtttcctccaaatccttt |
299 |
Q |
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| T |
1124 |
tggtggatattcatcttaatttttctataagaaaattctagagatttcgttgtatctagaattttctccactttt-ttgtttcctccaaatccttt |
1030 |
T |
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