View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20125_high_17 (Length: 296)
Name: NF20125_high_17
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_high_17 |
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| [»] scaffold0070 (2 HSPs) |
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| [»] scaffold0955 (2 HSPs) |
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Alignment Details
Target: scaffold0070 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 122 - 280
Target Start/End: Complemental strand, 19515 - 19357
Alignment:
| Q |
122 |
gttatttgattaactattagaaaaataagatttttaaaaaatgaagtatgtctatatttttccatgtttgtagaaacagaacagaagctgaacttgttga |
221 |
Q |
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| T |
19515 |
gttatttgattaactattagaaaaattagatttttaaaaaatgaagtatgtctatatttttccatgtttgtacaaacagaacataagctgaacttgttga |
19416 |
T |
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| Q |
222 |
ggaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtgacttggatc |
280 |
Q |
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| T |
19415 |
ggaaattgcgatggatgtgctgcaaaagttgaatcgtgtttatgttggtgacttggatc |
19357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 38866 - 38770
Alignment:
| Q |
157 |
aaaaaatgaagtatgtctatatttttccatgtttgtagaaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttga |
253 |
Q |
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| T |
38866 |
aaaaaaagaagtatgtttatatttttccatgtttgtacaaacagaacagaagctgaacttgttgaggaaattgcgatgggtgtgctgcaaaagttga |
38770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 123 - 280
Target Start/End: Original strand, 25692409 - 25692566
Alignment:
| Q |
123 |
ttatttgattaactattagaaaaataagatttttaaaaaatgaagtatgtctatatttttccatgtttgtagaaacagaacagaagctgaacttgttgag |
222 |
Q |
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| T |
25692409 |
ttatttgattagctattagaaaaataagatttttaaaaaatgaagtatgtctatatttttccatatttgtacaaacagaacagaagctgaacttgttgag |
25692508 |
T |
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| Q |
223 |
gaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtgacttggatc |
280 |
Q |
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| T |
25692509 |
gaaattgcaatggatgtgctgcaaaagttgaatcgtgtttatgttggtgacttggatc |
25692566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 25384122 - 25384209
Alignment:
| Q |
185 |
atgtttgtagaaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtga |
272 |
Q |
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| T |
25384122 |
atgtttgtataaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagctgaaacatgtttatgttcgtga |
25384209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 25602609 - 25602677
Alignment:
| Q |
212 |
aacttgttgaggaaattgcgatggatgtgctgcaaaagttgaatagtgtttatgttggtgacttggatc |
280 |
Q |
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| T |
25602609 |
aacttgttgaggaaattgcaatggatgtgctgcaaaatttgaatcgtctttatgttggtgacttggatc |
25602677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 25389413 - 25389456
Alignment:
| Q |
120 |
atgttatttgattaactattagaaaaataagatttttaaaaaat |
163 |
Q |
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| T |
25389413 |
atgttatttgatttactattagaaaaataagatttttaaaaaat |
25389456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 25383499 - 25383543
Alignment:
| Q |
23 |
ataaaaagggaagttctcaagtatattagataacaagagaggaaa |
67 |
Q |
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| T |
25383499 |
ataaaaagggaagttgtcaagtatattagataataagagaggaaa |
25383543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 25645360 - 25645407
Alignment:
| Q |
23 |
ataaaaagggaagttctcaagta---tattagataacaagagaggaaa |
67 |
Q |
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| T |
25645360 |
ataaaaagggaatttctcaagtatattattagataacaagagaggaaa |
25645407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 25384082 - 25384122
Alignment:
| Q |
120 |
atgttatttgattaactattagaaaaataagatttttaaaa |
160 |
Q |
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| T |
25384082 |
atgttatttgattaactattggaaatttaagatttttaaaa |
25384122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 3574 - 3670
Alignment:
| Q |
157 |
aaaaaatgaagtatgtctatatttttccatgtttgtagaaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttga |
253 |
Q |
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| T |
3574 |
aaaaaaagaagtatgtttatatttttccatgtttgtacaaacagaacagaagctgaacttgttgaggaaattgcgatggatgtgctgcaaaagttga |
3670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 3418 - 3464
Alignment:
| Q |
120 |
atgttatttgattaactattagaaaaataagatttttaaaaaatgaa |
166 |
Q |
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| T |
3418 |
atgttatttgattaactattagaaaaataagatttttaaaaaatgaa |
3464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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