View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20125_high_18 (Length: 293)
Name: NF20125_high_18
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 11086287 - 11086549
Alignment:
| Q |
14 |
aatatacagatgtaacatacaaactgcagcccttctctcaacaacctttggaagacaaaatccccgcccttcggacaaaataaat--gttacacataata |
111 |
Q |
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| T |
11086287 |
aatatacagatgtaacatacaaactgcagcccttctctcaacaacctttggaagacaaaatccccgcccttcggacaaaataaatatgttacacataata |
11086386 |
T |
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| Q |
112 |
ggtaacgagtaggactagaacaattaccattgaaagcataccactacccacggattcaagatcaagcagtatcattttgtgaagggctatacttcaagtc |
211 |
Q |
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| T |
11086387 |
ggtaacgagtaggactggaacaattaccattgaaagcataccactacccacggattcaagatcaagcagtatcattttgtgaagggctatactccaagtc |
11086486 |
T |
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| Q |
212 |
agacaggtacctaggcaagtatacttttctaaacattcatctacaactagccttgggcgatag |
274 |
Q |
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| T |
11086487 |
agacaggtacctaggcaagtatacttttctaaacattcatctacaactagccttgggcgatag |
11086549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 1276169 - 1276240
Alignment:
| Q |
14 |
aatatacagatgtaacatacaaactgcagcccttctctcaacaacctttggaagacaaaatccccgcccttcg |
86 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
1276169 |
aatataca-atgtaacatacaaactgcagcccttctctgaacaacctttggaagacaaaatccctgcccttcg |
1276240 |
T |
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