View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20125_high_19 (Length: 291)
Name: NF20125_high_19
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_high_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 2 - 288
Target Start/End: Original strand, 33790903 - 33791189
Alignment:
| Q |
2 |
ccaatttggttgatttaatttcaggggtgtgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33790903 |
ccaatttggttgatttaatttcaggggtgtgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactg |
33791002 |
T |
|
| Q |
102 |
taagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagaga |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33791003 |
taagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagaga |
33791102 |
T |
|
| Q |
202 |
ttcagttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggattagtatcaactgttgatgatgtccatct |
288 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
33791103 |
ttctgttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatggattagtatcaactgttaatgatgtacatct |
33791189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 262
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
| Q |
148 |
tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga |
247 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || || | || ||||||||| | || | |||| | || ||||||| |||||| ||||||||||| |
|
|
| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
|
| Q |
248 |
agacgtgatggatta |
262 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
33764112 |
agacgtgacggatta |
33764098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University