View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20125_high_20 (Length: 283)
Name: NF20125_high_20
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 12144230 - 12144494
Alignment:
| Q |
1 |
agcaagagaagaaaaccacatattacattgtagttgatcaatgtcacatgaaattgacaccacaatatcacataagtgttgtcccaaatcatcaaactat |
100 |
Q |
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| T |
12144230 |
agcaagagaagaaaaccacttattacattgtagttgatcaatatcacatgaaattgacaccacaatgtcacataagtgttgtcccaaatcatcaaactat |
12144329 |
T |
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| Q |
101 |
gaactacgtatggattaaaacatcatatgcaaatatttagatcatgattcaccatttctaatagattgtatgctatgtcaaatccttaactataccacta |
200 |
Q |
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| T |
12144330 |
gaagtatgtatggattaaaacatcatatgcaaatatttagatcatgattcaccatttctaatagattgtatgctatgtcaaatccttaactataccacta |
12144429 |
T |
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| Q |
201 |
gataaaatggatgtaagagcgagtttaaaaggcaaatcgtgtatatgattaactaggatacgaag |
265 |
Q |
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| T |
12144430 |
gataaaatggatgtaagagcgagtttaaaaggccaatcgtgtataatattaactaggatacgaag |
12144494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 3094282 - 3094339
Alignment:
| Q |
25 |
acattgtagttgatcaatgtcacatgaaattgacaccacaatatcacataagtgttgt |
82 |
Q |
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| T |
3094282 |
acattgtagttgaccaatgtcacatgacattgacaccacaatgtcgcctaagtgttgt |
3094339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 532241 - 532158
Alignment:
| Q |
5 |
agagaagaaaaccacatattacattgtagttgatcaatgtcacatgaaattgacaccacaatatcacataagtgttgtcccaaa |
88 |
Q |
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| T |
532241 |
agagaagaaaatcacttgtcacattgtggttggccaatgtcacatgacattggcaccaccatgtcacccaagtgttgtcccaaa |
532158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 30674991 - 30675061
Alignment:
| Q |
8 |
gaagaaaaccacatattacattgtagttgatcaatgtcacatgaaattgacaccacaatatcacataagtg |
78 |
Q |
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| T |
30674991 |
gaagaaaaccacttgtcacattgtggttggctaatgtcacatgacattgacaccacaatttcacacaagtg |
30675061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 16205776 - 16205712
Alignment:
| Q |
7 |
agaagaaaaccacatattacattgtagttgatcaatgtcacatgaaattgacaccacaatatcac |
71 |
Q |
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| T |
16205776 |
agaagaaagccacttgtgacattgtggttgatcaatgtcacatgacattggcaccccaatgtcac |
16205712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 50193999 - 50194040
Alignment:
| Q |
25 |
acattgtagttgatcaatgtcacatgaaattgacaccacaat |
66 |
Q |
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| T |
50193999 |
acattgtggttgaccaatgtcacatgaaattgaaaccacaat |
50194040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 6894089 - 6894129
Alignment:
| Q |
7 |
agaagaaaaccacatattacattgtagttgatcaatgtcac |
47 |
Q |
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| T |
6894089 |
agaagaaaaccacttatgacattgtggttgatcaatgtcac |
6894129 |
T |
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