View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20125_high_24 (Length: 227)

Name: NF20125_high_24
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20125_high_24
NF20125_high_24
[»] chr5 (3 HSPs)
chr5 (1-123)||(30002864-30002986)
chr5 (86-127)||(1282250-1282291)
chr5 (82-123)||(42310849-42310890)
[»] chr1 (7 HSPs)
chr1 (1-123)||(37689229-37689352)
chr1 (83-123)||(15374705-15374745)
chr1 (81-123)||(3788435-3788477)
chr1 (83-123)||(15373957-15373997)
chr1 (83-123)||(38619017-38619057)
chr1 (83-115)||(46357885-46357917)
chr1 (83-123)||(46358617-46358657)
[»] chr2 (7 HSPs)
chr2 (124-227)||(38082676-38082790)
chr2 (81-123)||(26021917-26021959)
chr2 (80-124)||(5504343-5504387)
chr2 (83-123)||(5505228-5505268)
chr2 (81-123)||(6182092-6182134)
chr2 (82-124)||(42946476-42946518)
chr2 (81-129)||(9371848-9371896)
[»] chr7 (2 HSPs)
chr7 (83-123)||(9378729-9378769)
chr7 (86-124)||(9379806-9379844)
[»] chr3 (5 HSPs)
chr3 (83-124)||(51491708-51491749)
chr3 (83-123)||(42147556-42147596)
chr3 (81-123)||(50306529-50306571)
chr3 (81-124)||(10343329-10343372)
chr3 (81-123)||(32355864-32355906)
[»] scaffold0016 (1 HSPs)
scaffold0016 (83-123)||(67247-67287)
[»] chr8 (5 HSPs)
chr8 (81-123)||(1488492-1488534)
chr8 (83-124)||(10501920-10501961)
chr8 (83-122)||(10500953-10500992)
chr8 (81-121)||(31694164-31694204)
chr8 (83-123)||(38544334-38544374)
[»] chr4 (2 HSPs)
chr4 (81-123)||(5825334-5825376)
chr4 (82-123)||(45534028-45534069)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 30002986 - 30002864
Alignment:
Q  1 gggtgggaaaagatagggtgtagacagtccataataaaatcagtattccttttcaatttaatggtaaaatgtcaactgatctatggtggaaaaatctttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||||||    
T  30002986 gggtgggaaaagatagggtgtagacagtccataataaaatcagtattcctttttaatttaacggtaaaatgtcaactgacctatggtgggaaaatctttc 30002887  T
Q  101 cccttcccaccctaaatgccacc 123  Q
    |||||||||||||||||||||||    
T  30002886 cccttcccaccctaaatgccacc 30002864  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 1282291 - 1282250
Alignment:
Q  86 gtggaaaaatctttccccttcccaccctaaatgccaccacaa 127  Q
    |||| ||| |||||||| ||||||||||||||||||||||||    
T  1282291 gtgggaaactctttcccattcccaccctaaatgccaccacaa 1282250  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 42310890 - 42310849
Alignment:
Q  82 tatggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    |||||||| ||| |||||||| ||||||||||||||||||||    
T  42310890 tatggtgggaaactctttcccattcccaccctaaatgccacc 42310849  T

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Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 37689352 - 37689229
Alignment:
Q  1 gggtgggaaaagatagggtgtagacagtccataataaaatcagtattccttttcaatttaatggtaaaatgtcaactgatctatggtggaaaaatctttc 100  Q
    |||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  37689352 gggtgggaaaagatagggcgtagacagtccataatgaaatcaatattccttttcaatttaatggtaaaatgtcagctgacctatggtggaaaaatctttc 37689253  T
Q  101 cc-cttcccaccctaaatgccacc 123  Q
    || ||||||| |||||||||||||    
T  37689252 cctcttcccatcctaaatgccacc 37689229  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 15374705 - 15374745
Alignment:
Q  83 atggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  15374705 atggtgggaaaatctttccccttcccaccctaaatgccacc 15374745  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 3788477 - 3788435
Alignment:
Q  81 ctatggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    ||||||||| ||| |||||||||||||||||||||||||||||    
T  3788477 ctatggtgggaaactctttccccttcccaccctaaatgccacc 3788435  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 15373997 - 15373957
Alignment:
Q  83 atggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  15373997 atggtgggaaaatctttccccatcccaccctaaatgccacc 15373957  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 38619017 - 38619057
Alignment:
Q  83 atggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    ||||||||||| |||||||||||||||  ||||||||||||    
T  38619017 atggtggaaaactctttccccttcccattctaaatgccacc 38619057  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 46357917 - 46357885
Alignment:
Q  83 atggtggaaaaatctttccccttcccaccctaa 115  Q
    ||||||||||||| |||||||||||||||||||    
T  46357917 atggtggaaaaatatttccccttcccaccctaa 46357885  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 46358617 - 46358657
Alignment:
Q  83 atggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    ||||||| ||||||||| ||| |||||||||||||||||||    
T  46358617 atggtgggaaaatcttttcccatcccaccctaaatgccacc 46358657  T

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Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 38082676 - 38082790
Alignment:
Q  124 acaattgtctattaagatgtttcttcgaagtaatatttttt-----------agtaagttctagtattttttagtaagttccattttagagactcacaag 212  Q
    |||||| ||||||||||||||||||||||||||||||||||           |||||| || | ||||||||||||||||||||||||||||||||||||    
T  38082676 acaattctctattaagatgtttcttcgaagtaatatttttttcacttgggttagtaaggtccaatattttttagtaagttccattttagagactcacaag 38082775  T
Q  213 attagaaataaacct 227  Q
    |||||||||||||||    
T  38082776 attagaaataaacct 38082790  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 26021917 - 26021959
Alignment:
Q  81 ctatggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    ||||||||| ||| |||||||||||||||||||||||||||||    
T  26021917 ctatggtgggaaactctttccccttcccaccctaaatgccacc 26021959  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 5504387 - 5504343
Alignment:
Q  80 tctatggtggaaaaatctttccccttcccaccctaaatgccacca 124  Q
    ||||| |||| ||| ||||||||||||||||||||||||||||||    
T  5504387 tctatagtgggaaactctttccccttcccaccctaaatgccacca 5504343  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 5505228 - 5505268
Alignment:
Q  83 atggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  5505228 atggtggaaaactctttcctcttcccaccctaaatgccacc 5505268  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 6182134 - 6182092
Alignment:
Q  81 ctatggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    |||||||||||||||||||||| | ||||||||||||| ||||    
T  6182134 ctatggtggaaaaatctttcccttacccaccctaaatgtcacc 6182092  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 42946476 - 42946518
Alignment:
Q  82 tatggtggaaaaatctttccccttcccaccctaaatgccacca 124  Q
    |||||||| ||| |||||||| |||||||||||||||||||||    
T  42946476 tatggtgggaaactctttcccattcccaccctaaatgccacca 42946518  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 9371848 - 9371896
Alignment:
Q  81 ctatggtggaaaaatctttccccttcccaccctaaatgccaccacaatt 129  Q
    ||||||||| |||||||||||| |||||||| ||||| ||||| |||||    
T  9371848 ctatggtgggaaaatctttcccgttcccaccttaaataccacctcaatt 9371896  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 9378769 - 9378729
Alignment:
Q  83 atggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9378769 atggtggaaaaatctttccccttcccaccctaaatgccacc 9378729  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 9379806 - 9379844
Alignment:
Q  86 gtggaaaaatctttccccttcccaccctaaatgccacca 124  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  9379806 gtggaaaaatctttccccatcccaccctaaatgccacca 9379844  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 51491749 - 51491708
Alignment:
Q  83 atggtggaaaaatctttccccttcccaccctaaatgccacca 124  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  51491749 atggtggaaaaatctttccccttcccaccctaaataccacca 51491708  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 42147556 - 42147596
Alignment:
Q  83 atggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  42147556 atggtgggaaaatctttccccttcccaccctaaatgccacc 42147596  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 50306529 - 50306571
Alignment:
Q  81 ctatggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    ||||||||| ||| |||||||||||||||||||||||||||||    
T  50306529 ctatggtgggaaactctttccccttcccaccctaaatgccacc 50306571  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 10343372 - 10343329
Alignment:
Q  81 ctatggtggaaaaatctttccccttcccaccctaaatgccacca 124  Q
    ||||||||||||||||||||||   |||||||||||||||||||    
T  10343372 ctatggtggaaaaatctttccctcacccaccctaaatgccacca 10343329  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 32355906 - 32355864
Alignment:
Q  81 ctatggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    |||||||||||||||||||||| | ||||||||||||| ||||    
T  32355906 ctatggtggaaaaatctttcccttacccaccctaaatgtcacc 32355864  T

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Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 67287 - 67247
Alignment:
Q  83 atggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  67287 atggtgggaaaatctttccccttcccaccctaaatgccacc 67247  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 1488492 - 1488534
Alignment:
Q  81 ctatggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  1488492 ctatggtggaaaactctttccccttcccatcctaaatgccacc 1488534  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 10501920 - 10501961
Alignment:
Q  83 atggtggaaaaatctttccccttcccaccctaaatgccacca 124  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  10501920 atggtagaaaaatcttttcccttcccaccctaaatgccacca 10501961  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 10500992 - 10500953
Alignment:
Q  83 atggtggaaaaatctttccccttcccaccctaaatgccac 122  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  10500992 atggtggaaaaatcttttccattcccaccctaaatgccac 10500953  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 31694204 - 31694164
Alignment:
Q  81 ctatggtggaaaaatctttccccttcccaccctaaatgcca 121  Q
    ||||||||| |||||||| ||||| ||||||||||||||||    
T  31694204 ctatggtgggaaaatcttccccctacccaccctaaatgcca 31694164  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 38544334 - 38544374
Alignment:
Q  83 atggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    ||||||||||||| |||| | ||||||||||||||||||||    
T  38544334 atggtggaaaaatatttctcattcccaccctaaatgccacc 38544374  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 5825376 - 5825334
Alignment:
Q  81 ctatggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||    
T  5825376 ctatggtgggaaactctttcccattcccaccctaaatgccacc 5825334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 45534069 - 45534028
Alignment:
Q  82 tatggtggaaaaatctttccccttcccaccctaaatgccacc 123  Q
    |||||||| |||||||| ||||| ||||||||||||||||||    
T  45534069 tatggtgggaaaatcttccccctacccaccctaaatgccacc 45534028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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