View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20125_high_4 (Length: 548)
Name: NF20125_high_4
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Original strand, 43194320 - 43194846
Alignment:
| Q |
19 |
caattctactagatgacacatcaaactttactggagagaagaacgcaaacccgaatagaaactctgctcgtggatttgatgtcattgacaacattaagac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194320 |
caattctactagatgacacatcaaactttactggagagaaaaacgcaaatccgaatagaaactctgctcgtggatttgatgtcattgacaacattaagac |
43194419 |
T |
|
| Q |
119 |
agctgtagagaatgtatgtcctggcgttgtatcatgtgctgatatccttgccattgcggccgcggactccgttgcaatcgtaagtgtagtcatata---- |
214 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
43194420 |
agccgtagagaatgtatgtcctggcgttgtatcatgtgctgatatccttgccatcgctgccgcggactccgttgcaatcgtaagtgtagtcatatatcaa |
43194519 |
T |
|
| Q |
215 |
---attaattactcaaataatcaaaatctaattaatacttcaattgcaagtataatcatgcaaaagtaaattaagtgaaaattaatcaatatttcaattg |
311 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43194520 |
tgaattaattactcaaacaatcaaaatctaattaatacttcaattgcaagtgtaatcatgcaaaagtaaattaagtgaaaattaatcaatatttcaactg |
43194619 |
T |
|
| Q |
312 |
tcgtgtttcttttaatttacatgatagcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaaca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194620 |
tcgtgtttcttttaatttacatgatagcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaaca |
43194719 |
T |
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| Q |
412 |
ccgcgatcccagcaccaacttcaaaccttaatacactcacctcaatgtttagtgctgttggtctttctagcaaggacttggtcacattgtcaggtgcaat |
511 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43194720 |
ccgcaatcccggcaccaacttcaaaccttaatacactcacctcaatgtttagtgctgttggtctttccagcaaggacttggtcacattgtcaggtgcaat |
43194819 |
T |
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| Q |
512 |
tgcattgatttggacgataagcctatg |
538 |
Q |
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| T |
43194820 |
tgcattgatttggacgataagcctatg |
43194846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 43188866 - 43189050
Alignment:
| Q |
19 |
caattctactagatgacacatcaaactttactggagagaagaacgcaaacccgaatagaaactctgctcgtggatttgatgtcattgacaacattaagac |
118 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||| ||||| ||||||||||||||||| ||||| |
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| T |
43188866 |
caattctactagatgacacatcaaactttaccggagagaagaacgcactcccgaataagaactctgttcgaggattcgatgtcattgacaacataaagac |
43188965 |
T |
|
| Q |
119 |
agctgtagagaatgtatgtcctggcgttgtatcatgtgctgatatccttgccattgcggccgcggactccgttgcaatcgtaagt |
203 |
Q |
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| T |
43188966 |
ggcggtagagaacgtatgccccggagttgtatcatgtgctgatatccttgccattgctgccacagactccgttgcaattgtaagt |
43189050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 336 - 506
Target Start/End: Original strand, 43180297 - 43180467
Alignment:
| Q |
336 |
tagcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaacaccgcgatcccagcaccaacttcaa |
435 |
Q |
| |
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|||||||| || ||||||||||| |||||||||||||||||||| || || |||||||||||||| ||||||||||| || ||||| ||||||||||| | |
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| T |
43180297 |
tagcttggaggtccaacctggaatgtaaaacttggaagaagagatgctaaaacggctagtcaatccgctgctaacactgccatcccggcaccaacttcca |
43180396 |
T |
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| Q |
436 |
accttaatacactcacctcaatgtttagtgctgttggtctttctagcaaggacttggtcacattgtcaggt |
506 |
Q |
| |
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|||| ||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||| |
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| T |
43180397 |
acctcaatacactcacctcaatgtttagcgccgttggtctttctagcaaagatttggtcacattgtcaggt |
43180467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 320 - 518
Target Start/End: Original strand, 43189133 - 43189331
Alignment:
| Q |
320 |
cttttaatttacatgatagcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaacaccgcgatc |
419 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || ||||||||||||| ||| ||||| || ||| |
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| T |
43189133 |
cttttaatttacatgatagcttggtggcccaacctggaatgtaaaacttggaagaagagatgccacaactgctagtcaatctgatgcgaacactgccatc |
43189232 |
T |
|
| Q |
420 |
ccagcaccaacttcaaaccttaatacactcacctcaatgtttagtgctgttggtctttctagcaaggacttggtcacattgtcaggtgcaattgcattg |
518 |
Q |
| |
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||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||| | ||||||||| ||| ||||||||||| ||||| ||||| |
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| T |
43189233 |
ccaagaccaacttccaaccttaatatactcacctcaatgtttaagaatgttggtctttccaccaaggacttagtcgcattgtcaggtacaattccattg |
43189331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 43180037 - 43180222
Alignment:
| Q |
19 |
caattctactagatgacacatcaaactttactggagagaagaacgcaaacccgaatagaaactctgctcgtggatttgatgtcattgacaacattaagac |
118 |
Q |
| |
|
||||||| ||||||||||||||| |||||| || |||||||| ||||| || ||||||||||| |||||||||||||||||||| |||||||| ||||| |
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| T |
43180037 |
caattctcttagatgacacatcaagctttaccggtgagaagaatgcaaatccaaatagaaactccgctcgtggatttgatgtcatcgacaacataaagac |
43180136 |
T |
|
| Q |
119 |
agctgtagagaatgtatgtcctggcgttgtatcatgtgctgatatccttgccattgcggccgcggactccgttgcaatcgtaagtg |
204 |
Q |
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| T |
43180137 |
agccgtagagaacgtatgccccggagttgtatcatgtgctgatatcctagccattgctgccgcagactctgttgcaattgtaagtg |
43180222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 502
Target Start/End: Original strand, 36190635 - 36190800
Alignment:
| Q |
337 |
agcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaacaccgcgatcccagcaccaacttcaaa |
436 |
Q |
| |
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||||||| |||||||| ||| | || ||||||||||||||||| || | || |||||| |||| ||||| |||| | ||||||||||| ||||||| |
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| T |
36190635 |
agcttggaggcccaacatgggatgtgaaacttggaagaagagatgcaagaacagctagtaaatcagctgcaaacaatgacatcccagcacccacttcaag |
36190734 |
T |
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| Q |
437 |
ccttaatacactcacctcaatgtttagtgctgttggtctttctagcaaggacttggtcacattgtc |
502 |
Q |
| |
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||| || ||||| ||||| ||||| |||| |||||||||| | |||||| |||||| ||||||| |
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| T |
36190735 |
cctcaaccaactcatctcaaggtttaatgctcttggtctttccaccaaggatttggtcgcattgtc |
36190800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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