View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20125_high_7 (Length: 458)
Name: NF20125_high_7
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 41 - 439
Target Start/End: Complemental strand, 43238546 - 43238149
Alignment:
| Q |
41 |
caaaatgaaaaattaccctttcaaagaatattgaatttgagttatgaataaataaacgcgtaacattatgagaaataaactattggatgattatttgctc |
140 |
Q |
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| T |
43238546 |
caaaatgaaaaattacccttttaaagaatattgaatttgagttatgaataaataaacgcgtaacattatgagagataaactgttggatgattatttgctc |
43238447 |
T |
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| Q |
141 |
acatatagagaaaatgtatgtgacagttttgaaatgnnnnnnnntcatgctatgattttaaaatatgaaaacatatgtataaatataattagtaaatatt |
240 |
Q |
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| T |
43238446 |
acatatagagaaaatgaatgtgacagttttgaaatgaaaaaaa-tcatactatgattttaaaatatgaaaacatatgtataaatataattagtaaatatt |
43238348 |
T |
|
| Q |
241 |
ggtgtgtcttcaatttattttggtataaaataatataannnnnnnattctccaatttttgcttgatgataattatgtctttaatttaattatcactcttg |
340 |
Q |
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| T |
43238347 |
gatgtgtcttcaatttattttggtataaaataatataatttttttattctccaatttttgcttgatgataatgatgtctttaatttaattatcactcttg |
43238248 |
T |
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| Q |
341 |
cattgatttatttttatataaattttgagtatataattttgctcccataaattaaaatgtatggatccgtccatgctataaatgcatcctggttcccct |
439 |
Q |
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| T |
43238247 |
cattgatttatttttatataaattttgagtatataattttgctcccataaattaaaatgtatggatccgtccctgctataaatgcatcctggttcccct |
43238149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 41 - 419
Target Start/End: Complemental strand, 27428782 - 27428408
Alignment:
| Q |
41 |
caaaatgaaaaattaccctttcaaagaa-tattgaatttgagttatgaataaataaacgcgtaacattatgagaaataaactattggatgattatttgct |
139 |
Q |
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||||||||||||||||||| |||| || ||||||||| || |||||||||||||||||||||| ||||||||| ||||| | |||||||||||||||| |
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| T |
27428782 |
caaaatgaaaaattaccctcacaaaaaaatattgaattggatttatgaataaataaacgcgtaaaattatgagagataaattggtggatgattatttgct |
27428683 |
T |
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| Q |
140 |
cacatatagagaaa---atgtatgtgacagttttgaaatgnnnnnnnntcatgctatgattttaaaatatgaaaacatatgtataaatataattagtaaa |
236 |
Q |
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|||||||||||||| |||||||||| ||| |||||||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||| | |
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| T |
27428682 |
cacatatagagaaaaatatgtatgtgatagtgttgaaatg--aaaaaatcatgctataattttaaaatatgaagacatacatataaatataattagtaga |
27428585 |
T |
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| Q |
237 |
tattggtgtgtcttcaatttattttggtataaaataatataannnnnnnattctccaatttttgcttgatgataattatgtctttaatttaattatcact |
336 |
Q |
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| T |
27428584 |
tattgatgtgtctccaatt--ttttggtacaaaatgatataatttttgtattctccaatttttgcatcttgataattatgtctttatt----gtatcact |
27428491 |
T |
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| Q |
337 |
cttgcattgatttatttttatataaattttgagtatataattttgctcccataaattaaaatgtatggatccgtccatgctat |
419 |
Q |
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| T |
27428490 |
cttgcattgatttatttttatataaatgttgagtataaaattttgtccccgcaaatcaaaatttctagatccgtccctgctat |
27428408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43238644 - 43238604
Alignment:
| Q |
1 |
caggcacggatctaaggccaaacaatagagggcagctgccc |
41 |
Q |
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| T |
43238644 |
caggcacagatctaaggccaaacaattgagggcagctgccc |
43238604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 226 - 398
Target Start/End: Complemental strand, 7339435 - 7339268
Alignment:
| Q |
226 |
taattagtaaatattggtgtgtcttcaatttattttggtataaaataatataannnnnnnattctccaatttttgcttgatgataattatgtctttaatt |
325 |
Q |
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||||||||| ||||||||||||||||||||| ||| ||||||||| |||||| |||||| ||||||| | | ||||||||||||||||| || |
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| T |
7339435 |
taattagtagatattggtgtgtcttcaattt-tttgagtataaaatgatataatttttctattctctaattttttttgggtgataattatgtctttattt |
7339337 |
T |
|
| Q |
326 |
taattatcactcttgcattgatttatttttatataaattttgagtatataattttgctcccataaattaaaat |
398 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| |
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| T |
7339336 |
ta----tcactcttgcattgatttatttttatataaattttgagtatataattttgcccccacaaatcaaaat |
7339268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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