View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20125_high_9 (Length: 408)

Name: NF20125_high_9
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20125_high_9
NF20125_high_9
[»] chr8 (5 HSPs)
chr8 (1-408)||(10500947-10501361)
chr8 (192-408)||(43433905-43434131)
chr8 (6-49)||(10501917-10501960)
chr8 (6-46)||(35885336-35885376)
chr8 (6-49)||(38544331-38544374)
[»] chr4 (4 HSPs)
chr4 (192-408)||(52533167-52533393)
chr4 (189-247)||(52869539-52869597)
chr4 (6-46)||(24471830-24471870)
chr4 (6-46)||(5825334-5825374)
[»] chr7 (2 HSPs)
chr7 (189-252)||(84469-84533)
chr7 (6-62)||(9378729-9378785)
[»] chr5 (5 HSPs)
chr5 (189-252)||(39148860-39148924)
chr5 (190-240)||(25074375-25074425)
chr5 (190-240)||(25132344-25132394)
chr5 (6-46)||(30002864-30002904)
chr5 (6-46)||(42310849-42310889)
[»] chr3 (3 HSPs)
chr3 (189-252)||(41041185-41041249)
chr3 (6-49)||(42147553-42147596)
chr3 (6-48)||(51491709-51491751)
[»] scaffold0016 (1 HSPs)
scaffold0016 (6-49)||(67247-67290)
[»] chr1 (3 HSPs)
chr1 (6-49)||(15374702-15374745)
chr1 (6-49)||(46358614-46358657)
chr1 (7-40)||(49961495-49961528)
[»] chr2 (2 HSPs)
chr2 (6-34)||(41677045-41677073)
chr2 (6-46)||(42946477-42946517)


Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 10500947 - 10501361
Alignment:
Q  1 ttaacggtggcatttagggtgggaatggaaaagatttttccaccatggggaaaatgatttttgaatgttcgattaaatgaagacaatgatattaccatac 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  10500947 ttaactgtggcatttagggtgggaatggaaaagatttttccaccatggg-aaagtgatttttgaatgttcgattaaatgaagaccatgatattaccatac 10501045  T
Q  101 tctctcaacgctatatttattttagagtatctttcccaactttctttctctcctttgtgtcctcccttcacccaccaccaccaacctctacacttccaac 200  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10501046 tctctcaacactatatttattttacagtatctttcccaactttctttctctcctttgtgtcctcccttcacccaccaccaccaacctctagacttccaac 10501145  T
Q  201 actatattatttctttgacatctttcaccactattctctcctcccccaccactagtaacatcaaacatgcatgaagattcgtaacaa----------aaa 290  Q
    ||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | |    
T  10501146 ac--tattatttcttttacatctttcaccactattctctcctcccccaccactagtaacatcaaacatgcatgaagattcgtaacaaattcataacgata 10501243  T
Q  291 ttgaaattagattaattaattgaaataaaattttggaatgcttaatttcggtgacaacttgtacgccacaattctttatttttctgtgtttagtttattc 390  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10501244 atgaaattagattaattaattgaaataaaattttggaatgcttaatttcggtgacaacctgtacgccacaattctttatttttctgtgtttagtttattc 10501343  T
Q  391 ttgaattgcataacaact 408  Q
    ||||||||||||||||||    
T  10501344 ttgaattgcataacaact 10501361  T

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Target: chr8; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 192 - 408
Target Start/End: Original strand, 43433905 - 43434131
Alignment:
Q  192 acttccaacactatattatttctttgacatctttcaccactattctctcctcccccaccactagtaacatcaaacatgcatgaagattcgtaacaaaa-- 289  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  43433905 acttccaacactatattatttcttttacatctttcaccactattctctcctcccccaccactagtaacatcaaacatgcatgaagattcgtaacaaattc 43434004  T
Q  290 --------attgaaattagattaattaattgaaataaaattttggaatgcttaatttcggtgacaacttgtacgccacaattctttatttttctgtgttt 381  Q
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  43434005 ataacgataatgaaattagattaattaattgaaataaaattttggaatgcttaatttcggtgacaacttgtccgccacaattctttatttttttgtgttt 43434104  T
Q  382 agtttattcttgaattgcataacaact 408  Q
    ||||| |||||||||||||||||||||    
T  43434105 agtttgttcttgaattgcataacaact 43434131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 10501960 - 10501917
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccatggg 49  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    
T  10501960 ggtggcatttagggtgggaagggaaaagatttttctaccatggg 10501917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 35885336 - 35885376
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccat 46  Q
    ||||||||||||||||||||||||||||| ||| |||||||    
T  35885336 ggtggcatttagggtgggaatggaaaagagtttcccaccat 35885376  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 38544374 - 38544331
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccatggg 49  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||    
T  38544374 ggtggcatttagggtgggaatgagaaatatttttccaccatggg 38544331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 192 - 408
Target Start/End: Complemental strand, 52533393 - 52533167
Alignment:
Q  192 acttccaacactatattatttctttgacatctttcaccactattctctcctcccccaccactagtaacatcaaacatgcatgaagattcgtaacaaaa-- 289  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       
T  52533393 acttccaacactatattattttttttacatctttcaccactattctctcctcccccaccacaagtaacatcaaacatgcatgaagattcgtaacaaattc 52533294  T
Q  290 --------attgaaattagattaattaattgaaataaaattttggaatgcttaatttcggtgacaacttgtacgccacaattctttatttttctgtgttt 381  Q
            | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52533293 ataacgataatgaaattagattaattaattgaaatataattttggaatgcttaatttcggtgacaacttgtacgccacaattctttatttttttgtgttt 52533194  T
Q  382 agtttattcttgaattgcataacaact 408  Q
    ||||| |||||||||||||||||||||    
T  52533193 agtttgttcttgaattgcataacaact 52533167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 52869539 - 52869597
Alignment:
Q  189 tacacttccaacactatattatttctttgacatctttcaccactattctctcctccccc 247  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||  ||||||||| ||||    
T  52869539 tacacttgcaacactatattatttcttttacatcttccaccacccttctctccttcccc 52869597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 24471830 - 24471870
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccat 46  Q
    ||||||||||||||||||||||||||||| ||| |||||||    
T  24471830 ggtggcatttagggtgggaatggaaaagagtttcccaccat 24471870  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 5825334 - 5825374
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccat 46  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  5825334 ggtggcatttagggtgggaatgggaaagagtttcccaccat 5825374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 84469 - 84533
Alignment:
Q  189 tacacttccaacactatattatttctttgacatctttcaccactattctctcc-tcccccaccac 252  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||  |||||||| |||||||||||    
T  84469 tacacttgcaacactatattatttcttttacatcttccaccacccttctctccttcccccaccac 84533  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 9378729 - 9378785
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccatggggaaaatgattttt 62  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||  ||||||||    
T  9378729 ggtggcatttagggtgggaaggggaaagatttttccaccatgggaaagttgattttt 9378785  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 39148860 - 39148924
Alignment:
Q  189 tacacttccaacactatattatttctttgacatctttcaccactattctctcc-tcccccaccac 252  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||  |||||||| |||||||||||    
T  39148860 tacacttgcaacactatattatttcttttacatcttccaccacccttctctccttcccccaccac 39148924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 25074375 - 25074425
Alignment:
Q  190 acacttccaacactatattatttctttgacatctttcaccactattctctc 240  Q
    ||||||||||||||| ||||||||||| ||| ||| |||||| ||||||||    
T  25074375 acacttccaacactagattatttcttttacaccttccaccaccattctctc 25074425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 25132344 - 25132394
Alignment:
Q  190 acacttccaacactatattatttctttgacatctttcaccactattctctc 240  Q
    ||||||||||||||| ||||||||||| ||| ||| |||||| ||||||||    
T  25132344 acacttccaacactagattatttcttttacaccttccaccaccattctctc 25132394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 30002864 - 30002904
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccat 46  Q
    |||||||||||||||||||| || ||||||||| |||||||    
T  30002864 ggtggcatttagggtgggaaggggaaagattttcccaccat 30002904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 42310849 - 42310889
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccat 46  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  42310849 ggtggcatttagggtgggaatgggaaagagtttcccaccat 42310889  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 41041249 - 41041185
Alignment:
Q  189 tacacttccaacactatattatttctttgacatctttcaccactattctctcc-tcccccaccac 252  Q
    ||||||| || ||||||||||||||||| ||||||| ||||||  |||||||| |||||||||||    
T  41041249 tacacttgcagcactatattatttcttttacatcttccaccacccttctctccttcccccaccac 41041185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 42147596 - 42147553
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccatggg 49  Q
    |||||||||||||||||||| || ||||||||| ||||||||||    
T  42147596 ggtggcatttagggtgggaaggggaaagattttcccaccatggg 42147553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 51491709 - 51491751
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccatgg 48  Q
    ||||| |||||||||||||| || |||||||||||||||||||    
T  51491709 ggtggtatttagggtgggaaggggaaagatttttccaccatgg 51491751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 67247 - 67290
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccatggg 49  Q
    |||||||||||||||||||| || ||||||||| ||||||||||    
T  67247 ggtggcatttagggtgggaaggggaaagattttcccaccatggg 67290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 15374745 - 15374702
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccatggg 49  Q
    |||||||||||||||||||| || ||||||||| ||||||||||    
T  15374745 ggtggcatttagggtgggaaggggaaagattttcccaccatggg 15374702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 46358657 - 46358614
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccatggg 49  Q
    |||||||||||||||||||  |||||||||||| ||||||||||    
T  46358657 ggtggcatttagggtgggatgggaaaagattttcccaccatggg 46358614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 49961528 - 49961495
Alignment:
Q  7 gtggcatttagggtgggaatggaaaagatttttc 40  Q
    |||||||||||||||||||||||||||| |||||    
T  49961528 gtggcatttagggtgggaatggaaaagagttttc 49961495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 41677073 - 41677045
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaaga 34  Q
    |||||||||||||||||||||||||||||    
T  41677073 ggtggcatttagggtgggaatggaaaaga 41677045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 42946517 - 42946477
Alignment:
Q  6 ggtggcatttagggtgggaatggaaaagatttttccaccat 46  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  42946517 ggtggcatttagggtgggaatgggaaagagtttcccaccat 42946477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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