View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20125_low_1 (Length: 954)
Name: NF20125_low_1
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 646; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 199 - 943
Target Start/End: Original strand, 26286516 - 26287254
Alignment:
| Q |
199 |
cttaacatggtttgaaggtagtcaagttttttccaattaagctttactcacagcccgaacaaacattccaaggtgaaaatttgaaagccacctgtagaaa |
298 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26286516 |
cttaacatggtttgaaggtagtcaagttttttccaattaagctttactcacagcccgaacaaacattccaaggtgaaaatttgaaagccacctatagaaa |
26286615 |
T |
|
| Q |
299 |
aataaaagtaaatcttaagtatataaccaagcaaagcatcaatgcaattctgtccataccatatggaaacacaaccaacgaaatatct---gatatagaa |
395 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26286616 |
aataaaagtaaatcataagtatataaccaagcaaaacatgaatgcaattctgtccataccatatggaaacacaaccaacgaaatatcttctgatatagaa |
26286715 |
T |
|
| Q |
396 |
tgcgcattcatctaataaacaataactaggcaaggcagcctcatttgtccagacaacaagatcttcacaacattaataatctaaaaggaaatttaaagac |
495 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26286716 |
tgcgcattcgtctcataaacaataactaggcaaggcagcctcatttgtccagacaacaagatcttcacaacattaataatctaaaaggaaatttaaagac |
26286815 |
T |
|
| Q |
496 |
ctttccaacttctcacagactgcaacagtgctgactccatctaaaatgcaattaattaataggtttagaccttcaatgcgagcttctgagattcctggtg |
595 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
26286816 |
ctttccaactcctcacagactgcaacagtgctgactccatctaaaatgcaattaattaataggtttagaccttcaatgcgagtttctgagattcctggtg |
26286915 |
T |
|
| Q |
596 |
cttcaacctctagagttggttcccacaataccgttctctcttccagtaatgctgttaccacatatggatccatgtccgaagcagcacgcccaccttcaaa |
695 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26286916 |
cttcaacctctagagttggtttccacaatactgttctctctgccagtaatgctgttaccacatatggatccatgtccgaagcagcacgcccaccttcaaa |
26287015 |
T |
|
| Q |
696 |
ttaacctacaatcaagacagtcggaaaggtaaacaacatgtccatgataatacttaacagattttttgtcagcaggttcagaatatccctgaaaataaaa |
795 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
26287016 |
ttaacctacaatcaagacagtcggaaaggtaaacaacatgtccatgataatacttaacagattttttgtcagcaggttgagaatatccctgaaaataaaa |
26287115 |
T |
|
| Q |
796 |
ataaccaccaactaacatctgcgtatcaaaaacatatatggtatacttatagattttagcactaaatcggccttggtattaatagaaaaaagtggaaaat |
895 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26287116 |
ataaccaccaactaacatctgcgt---------atatatggtatacttatagattttagcactaaatcggccttggtattaatagaaaaaagtggaaaat |
26287206 |
T |
|
| Q |
896 |
aaagctaaatgttagcagtggtataattcacctttgccgttcttctca |
943 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
26287207 |
aaagctaaatgttagcactggcataattcacctttgccgttcttctca |
26287254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 661 - 943
Target Start/End: Original strand, 26312232 - 26312505
Alignment:
| Q |
661 |
ggatccatgtccgaagcagcacgcccaccttcaaattaacctacaatcaagacagtcggaaaggtaaacaacatgtccatgataatacttaacagatttt |
760 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26312232 |
ggatccatgtccgaagcagcacgcccaccttcaaattaacctacaatcaagacagtcggaaaggtaaacaacatgtccatgataatacttaacagatttt |
26312331 |
T |
|
| Q |
761 |
ttgtcagcaggttcagaatatccctgaaaataaaaataaccaccaactaacatctgcgtatcaaaaacatatatggtatacttatagattttagcactaa |
860 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26312332 |
ttgtcagcaggttgagaatatccctgaaaataaaaataaccaccaactaacatctgcgt---------atatatggtatacttatagattttagcactaa |
26312422 |
T |
|
| Q |
861 |
atcggccttggtattaatagaaaaaagtggaaaataaagctaaatgttagcagtggtataattcacctttgccgttcttctca |
943 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
26312423 |
atcggccttggtattaatagaaaaaagtggaaaataaagctaaatgttagcactggcataattcacctttgccgttcttctca |
26312505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 26286337 - 26286483
Alignment:
| Q |
18 |
aaaggtgtgtgttcaaaagtgtgactttagcaccactccttataatcacataaactaaataaggcaaacccatgaaggggtaatgaatcttccccaaccn |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
26286337 |
aaaggtgtgtgttcaaaagtgtgactttagcatcactccttataatcaaataaactaaataaggcaaacccatgaaggggtagtgaatcttcgccaacc- |
26286435 |
T |
|
| Q |
118 |
nnnnnnnagcaggaatctctccccaccttgtttaatgtatgattccatg |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26286436 |
-ttttttagcaggaatctctccccaccttgtttaatgtatgattccatg |
26286483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 5e-68; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 298 - 731
Target Start/End: Original strand, 7202362 - 7202779
Alignment:
| Q |
298 |
aaataaaagtaaatctt-aagtatataaccaagcaaagcatcaatgcaattctgtccataccatatggaaacacaaccaacgaaatatctgatatagaat |
396 |
Q |
| |
|
||||||||| ||||||| ||| ||||||| || ||| |||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| ||| |
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|
| T |
7202362 |
aaataaaagcaaatcttgaagaatataacaaaacaa-gcatcaatgcaactctgtccataccatatgcaaacacagccaacgtaatatctgatatacaat |
7202460 |
T |
|
| Q |
397 |
gcgcattcatctaataaacaataactaggcaaggcagcctcatttgtccagacaacaagatcttcacaacattaataatctaaaaggaaatttaaagacc |
496 |
Q |
| |
|
| |||||||||| |||| ||||||||||||| |||||||||||||||||| ||||||||||||| || || | |||||||| ||||| | ||||| |
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|
| T |
7202461 |
gtgcattcatctcataaccaataactaggcatggcagcctcatttgtcca---aacaagatcttcataatataataaatctaaatggaaagtgaaagaga |
7202557 |
T |
|
| Q |
497 |
tttccaacttctcacagactgcaacagtgctgactccatctaaaatgcaattaattaataggtttagaccttcaatgcgagcttctgagattcctggtgc |
596 |
Q |
| |
|
|||| | || ||||||||||||| ||||||||||||| |||||| ||||| ||||||| |||||||| | |||||||| | | | || |
|
|
| T |
7202558 |
tttcaagctcctcacagactgcagcagtgctgactcc------------attaatcaatagatttagactttcaatgcaatcttctgag-ctgcaagagc |
7202644 |
T |
|
| Q |
597 |
ttcaacctctagagttggttcccacaataccgttctctcttccagtaatgctgttaccacatatggatccatgtccgaagcagcacgcccaccttcaaat |
696 |
Q |
| |
|
|||| |||||||||||||||||||||||| || |||||| ||| ||| ||||||||||||||||||||||||| |||||| | ||||| |||| || |
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|
| T |
7202645 |
ttcagcctctagagttggttcccacaataatgtactctctgccaataaggctgttaccacatatggatccatgttcgaagccggacgcctgtcttccaag |
7202744 |
T |
|
| Q |
697 |
taacctacaatcaagacagtcggaaaggtaaacaa |
731 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||| |
|
|
| T |
7202745 |
taacctacaatcaaaacagaagcaaaggtaaacaa |
7202779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 319 - 736
Target Start/End: Original strand, 7191118 - 7191553
Alignment:
| Q |
319 |
atataaccaagcaaagcatcaatgcaattctgtccataccatatggaaacacaaccaacgaaatat--ctgatatagaatgcgcattcatctaataaaca |
416 |
Q |
| |
|
|||||||||| ||| ||||||||| || ||||||||||||||||| | |||| ||||||||||| |||||||| |||| |||||||||| |||| || |
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|
| T |
7191118 |
atataaccaaacaa-gcatcaatgtaactctgtccataccatatgctatcacaggcaacgaaatatatctgatatacaatgtgcattcatcttataacca |
7191216 |
T |
|
| Q |
417 |
ataactaggcaaggcagcctcatttgtccagacaacaagatcttcacaacattaata-------------------atctaaaaggaaatttaaagacct |
497 |
Q |
| |
|
||||||||||| | ||||||| || |||||||||||||||| |||| || || |||| ||||||||||||| | ||||| || |
|
|
| T |
7191217 |
ataactaggcatgtcagcctcgtt-gtccagacaacaagatattcataatataaatataaatataatttataaataatctaaaaggaaagtgaaagagct |
7191315 |
T |
|
| Q |
498 |
ttccaacttctcacagactgcaacagtgctgactccatctaaaatgcaattaattaataggtttagaccttcaatgcgagcttctgagattcctggtgct |
597 |
Q |
| |
|
||||| || ||||||||||||| |||||| ||||||||||| || || |||||| ||||| |||||||||||||||| |||||||||| | | | ||| |
|
|
| T |
7191316 |
ttccagctcctcacagactgcagcagtgccgactccatctagaacgccattaatcaatagatttagaccttcaatgcaagcttctgag-ctgcaagagct |
7191414 |
T |
|
| Q |
598 |
tcaacctctagagttggttcccacaataccgttctctcttccagtaatgctgttaccacatatggatccatgtccgaagcagcacgcccaccttcaaatt |
697 |
Q |
| |
|
||| |||||||||||||||||||||||| || |||||| ||| ||||||||||||||||||||||||||||| ||||| | ||| | |||| || | |
|
|
| T |
7191415 |
tcagcctctagagttggttcccacaataatgtactctctgccaataatgctgttaccacatatggatccatgtttgaagccggacgtctgtcttctaagt |
7191514 |
T |
|
| Q |
698 |
aacctacaatcaagacagtcggaaaggtaaacaacatgt |
736 |
Q |
| |
|
|||||| |||||| ||||| | |||||||||||||||| |
|
|
| T |
7191515 |
aacctataatcaaaacagtagcgaaggtaaacaacatgt |
7191553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 318 - 459
Target Start/End: Original strand, 7183895 - 7184045
Alignment:
| Q |
318 |
tatataaccaagcaaagcatcaatgcaatt-ctgtccataccatatggaaacacaaccaacgaaatat--ctgatataga-------atgcgcattcatc |
407 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||| ||||| || |||||| ||| |||||| |||||||| | ||| ||||||||| |
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|
| T |
7183895 |
tatataaccaagcaa-gcatcaatgcaattgctgtccatatcatattcaagcacaactaacaaaatatatctgatatacagtgtgaaatgtgcattcatc |
7183993 |
T |
|
| Q |
408 |
taataaacaataactaggcaaggcagcctcatttgtccagacaacaagatct |
459 |
Q |
| |
|
| |||| ||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
7183994 |
tcataaccaataactaggcatgacagcctcatttgtccagacaacaagatct |
7184045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 602 - 675
Target Start/End: Original strand, 7197750 - 7197823
Alignment:
| Q |
602 |
cctctagagttggttcccacaataccgttctctcttccagtaatgctgttaccacatatggatccatgtccgaa |
675 |
Q |
| |
|
||||||||||| |||||||||||| || |||||| ||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
7197750 |
cctctagagtttgttcccacaataatgtactctctgccaataatgttgttaccacatatggatccatgttcgaa |
7197823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 442 - 532
Target Start/End: Original strand, 7197584 - 7197676
Alignment:
| Q |
442 |
gtccagacaacaagatcttcacaacattaataatctaaaaggaaatttaaagacctttcca--acttctcacagactgcaacagtgctgactc |
532 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||| ||||| | ||||| ||| ||| || |||||||| |||| |||||||||||| |
|
|
| T |
7197584 |
gtccagacaacaagatcttcataatataaataatctaaatggaaaatgaaagagcttcccagctctcctcacagaatgcagcagtgctgactc |
7197676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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