View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20125_low_10 (Length: 419)

Name: NF20125_low_10
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20125_low_10
NF20125_low_10
[»] chr4 (5 HSPs)
chr4 (11-176)||(1163645-1163810)
chr4 (199-338)||(1163877-1164016)
chr4 (341-384)||(3481787-3481830)
chr4 (344-382)||(29240032-29240070)
chr4 (343-381)||(50052345-50052383)
[»] chr8 (3 HSPs)
chr8 (340-381)||(43414498-43414539)
chr8 (344-382)||(15258845-15258883)
chr8 (340-381)||(15048098-15048139)
[»] chr2 (4 HSPs)
chr2 (340-381)||(40613819-40613860)
chr2 (340-380)||(20700957-20700997)
chr2 (343-382)||(3440124-3440163)
chr2 (340-381)||(2533265-2533306)
[»] scaffold0316 (1 HSPs)
scaffold0316 (343-382)||(17248-17287)
[»] chr3 (4 HSPs)
chr3 (338-380)||(11347840-11347882)
chr3 (344-382)||(26141446-26141484)
chr3 (344-382)||(41189680-41189718)
chr3 (340-381)||(33118767-33118808)
[»] chr7 (2 HSPs)
chr7 (343-380)||(12311049-12311086)
chr7 (340-381)||(46374741-46374782)
[»] chr1 (1 HSPs)
chr1 (340-380)||(32813389-32813429)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 1163645 - 1163810
Alignment:
Q  11 cacagaaactgatatttttctttgatgcattatatattgtaatttcaaccaccagcaattatgatatttatacacatgaagttgatctcatgcaaatgat 110  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1163645 cacagaaactgatatttttctttgatgcattatatatagtaagttcaaccaccagcaattatgatatttatacacatgaagttgatctcatggaaatgat 1163744  T
Q  111 ttttgtataaaataatatctctatttgtttgttagaaacttaattacaagcaagatatgtgatcat 176  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1163745 ttttttataaaattatatctctacttgtttgttagaaacttaattacaagcaagatatgtgatcat 1163810  T

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Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 199 - 338
Target Start/End: Original strand, 1163877 - 1164016
Alignment:
Q  199 cgtttgaattaaaacatggagagaaaccctaaacttgatttaggaattatgatatgctggaatattgaaaattcaacgtgcatccctcaatatatagcca 298  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1163877 cgtttaaattaaaacatggagagaaaccctaaacttgatttaggaattatgatatgctggaatattgaaaattcaacgtgcatccctcaatacatagcca 1163976  T
Q  299 aaatctgataatggaagtaactttaagggaagaattctga 338  Q
    |||| ||| |||||||||||||| || |||||||||||||    
T  1163977 aaatttgagaatggaagtaacttcaaaggaagaattctga 1164016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 384
Target Start/End: Original strand, 3481787 - 3481830
Alignment:
Q  341 agggtgtatggcaataaagggtgtctatttaacattttccttct 384  Q
    ||||||||||  |||||||||||||||| |||||||||||||||    
T  3481787 agggtgtatgagaataaagggtgtctatgtaacattttccttct 3481830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Original strand, 29240032 - 29240070
Alignment:
Q  344 gtgtatggcaataaagggtgtctatttaacattttcctt 382  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  29240032 gtgtatgggaataaagggtgtctatgtaacattttcctt 29240070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 50052383 - 50052345
Alignment:
Q  343 ggtgtatggcaataaagggtgtctatttaacattttcct 381  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  50052383 ggtgtatgggaataaagggtgtctatgtaacattttcct 50052345  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 43414539 - 43414498
Alignment:
Q  340 aagggtgtatggcaataaagggtgtctatttaacattttcct 381  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  43414539 aagggtgtatggcaataaagggtgtctatgtaacattttcct 43414498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 15258883 - 15258845
Alignment:
Q  344 gtgtatggcaataaagggtgtctatttaacattttcctt 382  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  15258883 gtgtatggaaataaagggtgtctatgtaacattttcctt 15258845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 15048139 - 15048098
Alignment:
Q  340 aagggtgtatggcaataaagggtgtctatttaacattttcct 381  Q
    |||||||||| | |||||||||||||||| ||||||||||||    
T  15048139 aagggtgtatcggaataaagggtgtctatataacattttcct 15048098  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 40613860 - 40613819
Alignment:
Q  340 aagggtgtatggcaataaagggtgtctatttaacattttcct 381  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  40613860 aagggtgtatgggaataaagggtgtctatgtaacattttcct 40613819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 20700957 - 20700997
Alignment:
Q  340 aagggtgtatggcaataaagggtgtctatttaacattttcc 380  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  20700957 aagggtgtatgggaataaagggtgtctatgtaacattttcc 20700997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 3440124 - 3440163
Alignment:
Q  343 ggtgtatggcaataaagggtgtctatttaacattttcctt 382  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  3440124 ggtgtatggaaataaagggtgtctatgtaacattttcctt 3440163  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 2533265 - 2533306
Alignment:
Q  340 aagggtgtatggcaataaagggtgtctatttaacattttcct 381  Q
    |||||||||||| |||||||||||| ||| ||||||||||||    
T  2533265 aagggtgtatgggaataaagggtgtatatataacattttcct 2533306  T

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Target: scaffold0316 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 17248 - 17287
Alignment:
Q  343 ggtgtatggcaataaagggtgtctatttaacattttcctt 382  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  17248 ggtgtatggaaataaagggtgtctatgtaacattttcctt 17287  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 11347882 - 11347840
Alignment:
Q  338 ataagggtgtatggcaataaagggtgtctatttaacattttcc 380  Q
    |||||||||||||| |||||||||||||||| || ||||||||    
T  11347882 ataagggtgtatgggaataaagggtgtctatgtaccattttcc 11347840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 26141484 - 26141446
Alignment:
Q  344 gtgtatggcaataaagggtgtctatttaacattttcctt 382  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  26141484 gtgtatggaaataaagggtgtctatgtaacattttcctt 26141446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 41189718 - 41189680
Alignment:
Q  344 gtgtatggcaataaagggtgtctatttaacattttcctt 382  Q
    |||||||| |||||||||||||||| |||||||||||||    
T  41189718 gtgtatggaaataaagggtgtctatgtaacattttcctt 41189680  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 33118808 - 33118767
Alignment:
Q  340 aagggtgtatggcaataaagggtgtctatttaacattttcct 381  Q
    |||||||||||| |||||||||||||||  ||||||||||||    
T  33118808 aagggtgtatggaaataaagggtgtctacgtaacattttcct 33118767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 380
Target Start/End: Original strand, 12311049 - 12311086
Alignment:
Q  343 ggtgtatggcaataaagggtgtctatttaacattttcc 380  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  12311049 ggtgtatggaaataaagggtgtctatgtaacattttcc 12311086  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 46374782 - 46374741
Alignment:
Q  340 aagggtgtatggcaataaagggtgtctatttaacattttcct 381  Q
    |||||||||||| |||||| ||||||||| ||||||||||||    
T  46374782 aagggtgtatgggaataaatggtgtctatgtaacattttcct 46374741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 32813389 - 32813429
Alignment:
Q  340 aagggtgtatggcaataaagggtgtctatttaacattttcc 380  Q
    |||||||||||| |||||| ||||||||| |||||||||||    
T  32813389 aagggtgtatgggaataaatggtgtctatgtaacattttcc 32813429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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