View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20125_low_12 (Length: 401)

Name: NF20125_low_12
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20125_low_12
NF20125_low_12
[»] chr2 (4 HSPs)
chr2 (12-386)||(16078152-16078526)
chr2 (112-234)||(38968827-38968949)
chr2 (43-133)||(33483007-33483097)
chr2 (55-171)||(44690884-44691000)
[»] chr8 (3 HSPs)
chr8 (12-232)||(44682158-44682379)
chr8 (56-174)||(4901624-4901742)
chr8 (46-201)||(31400160-31400314)
[»] chr6 (3 HSPs)
chr6 (39-138)||(17776401-17776500)
chr6 (42-132)||(15841338-15841428)
chr6 (54-141)||(20986770-20986857)
[»] chr1 (5 HSPs)
chr1 (47-141)||(43458034-43458128)
chr1 (62-201)||(23295288-23295427)
chr1 (68-176)||(40388087-40388195)
chr1 (68-176)||(40197980-40198088)
chr1 (24-132)||(24616310-24616418)
[»] chr3 (2 HSPs)
chr3 (44-176)||(48721248-48721380)
chr3 (50-172)||(49454576-49454698)
[»] chr5 (6 HSPs)
chr5 (65-294)||(3680386-3680615)
chr5 (15-176)||(16648372-16648533)
chr5 (29-98)||(25378833-25378902)
chr5 (65-176)||(40084782-40084893)
chr5 (43-132)||(15196239-15196328)
chr5 (29-98)||(18023846-18023915)
[»] chr4 (7 HSPs)
chr4 (68-171)||(55351273-55351376)
chr4 (26-187)||(46616118-46616279)
chr4 (44-176)||(29080867-29080999)
chr4 (41-176)||(47551280-47551415)
chr4 (68-172)||(22906817-22906922)
chr4 (68-172)||(22958485-22958590)
chr4 (144-176)||(13852277-13852309)
[»] chr7 (5 HSPs)
chr7 (23-133)||(12829388-12829498)
chr7 (68-201)||(6229926-6230059)
chr7 (86-182)||(44162460-44162557)
chr7 (44-171)||(41447931-41448058)
chr7 (55-136)||(31052753-31052834)


Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 12 - 386
Target Start/End: Original strand, 16078152 - 16078526
Alignment:
Q  12 ataggggtttaattgctcctttttcaatggaggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16078152 ataggggtttaattgctcctttttcaatggaggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgt 16078251  T
Q  112 ttttattaaggaattttggtatcttattaaaaatgaagttagaatcatgtttgatcaatttcatgaaaatgaagttgtgcctaggagtttcctaccgtat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16078252 ttttattaaggaattttggtatcttattaaaaatgaagttagaatcatgtttgatcaatttcatgaaaatgaagttttgcctaggagtttcctaccgtat 16078351  T
Q  212 tttgttacattgatcccaaagatgcgtaacccatttactttgaaggagttccgacctatttcactcttggggtgtctttataagttactctcaaaggtgt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16078352 tttgttacattgatcccaaagatgcgtaacccatttactttgaaggagttccgacctatttcactcttggggtgtctttataagttactctcaacggtgt 16078451  T
Q  312 tggccgctaggttgtctttggttatgaagtcaattatctcttcttcttaatcggcgtttattaaaggaaggaact 386  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  16078452 tggccgctaggttgtctttggttatgaagtcgattatctcttcttctcaatcggcgtttattaaaggaaggaact 16078526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 38968827 - 38968949
Alignment:
Q  112 ttttattaaggaattttggtatcttattaaaaatgaagttagaatcatgtttgatcaatttcatgaaaatgaagttgtgcctaggagtttcctaccgtat 211  Q
    ||||||||| ||||||| |||||| || ||  ||||||| ||||| |||||||||||||| ||||  ||||| || ||||| ||||||||  |  | |||    
T  38968827 ttttattaaagaatttttgtatctaatcaagcatgaagtgagaattatgtttgatcaattccatggtaatgaggtggtgccgaggagttttttgtcctat 38968926  T
Q  212 tttgttacattgatcccaaagat 234  Q
    |||||||| || |||||||||||    
T  38968927 tttgttactttaatcccaaagat 38968949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 33483007 - 33483097
Alignment:
Q  43 ggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtat 133  Q
    ||||||||||| |||||||||||||||||| ||  |||| |||||||| ||||| |  ||||| || | ||| ||||||||||||| ||||    
T  33483007 ggagattgaggcggtggtgaaggagagtgacggggataaaagtccgggaccggacggttttaatttcgctttcattaaggaattttagtat 33483097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 44690884 - 44691000
Alignment:
Q  55 ggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaaaaatgaagttaga 154  Q
    |||||||||||| |||||||||||||| ||| ||||  |||||| |||||| ||||  ||  |||| |||||||||||| | || ||  |||| |||||     
T  44690884 ggtggtgaaggaaagtgatggtaataaaagttcgggctcggatggctttaattttgccttctttaaagaattttggtatttgatcaaggatgaggttagg 44690983  T
Q  155 atcatgtttgatcaatt 171  Q
    || ||||| ||||||||    
T  44690984 ataatgttcgatcaatt 44691000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 44682158 - 44682379
Alignment:
Q  12 ataggggtttaattgctcctttttcaatggaggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccgg-atgactttaactttg 110  Q
    |||||| ||| ||||| ||||| || |||||||| |||||   |||||| ||||| |||||||||||||| || ||||  |||| |||  ||||||||||    
T  44682158 atagggatttgattgcccctttctctatggaggaaattgaaaaggtggttaaggaaagtgatggtaataaaagcccggacccgggatggttttaactttg 44682257  T
Q  111 tttttattaaggaattttggtatcttattaaaaatgaagttagaatcatgtttgatcaatttcatgaaaatgaagttgtgcctaggagtttcctaccgta 210  Q
     ||| || || ||||||||||||||||| ||  |||| || ||||||||||||||||||||||||| |||||| || ||||| ||||||||| |  | ||    
T  44682258 ctttcatcaaagaattttggtatcttatcaagcatgatgtgagaatcatgtttgatcaatttcatgcaaatgaggtggtgccgaggagtttcttgtccta 44682357  T
Q  211 ttttgttacattgatcccaaag 232  Q
    ||||||||| || || ||||||    
T  44682358 ttttgttactttaattccaaag 44682379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 174
Target Start/End: Original strand, 4901624 - 4901742
Alignment:
Q  56 gtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaaaaatgaagttagaa 155  Q
    |||||||| || |||||||| || ||||| |||||||  ||||  ||||||||||  ||| | ||| | ||||||||| | || ||  ||||||||||||    
T  4901624 gtggtgaaagaaagtgatgggaacaagagcccgggtctcgatggttttaactttgcgtttgtgaagaatttttggtatttgataaaggatgaagttagaa 4901723  T
Q  156 tcatgtttgatcaatttca 174  Q
    | |||||||||||||||||    
T  4901724 ttatgtttgatcaatttca 4901742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 201
Target Start/End: Original strand, 31400160 - 31400314
Alignment:
Q  46 gattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaaa-aa 144  Q
    |||||||| ||||||||||| ||||||||||||||| |||||| | |  ||||  || || |||| |||||| ||||| |||||| | |||||| || ||    
T  31400160 gattgaggaggtggtgaagg-gagtgatggtaataaaagtccgagacttgatggattcaattttgcttttatcaaggagttttggca-cttattgaagaa 31400257  T
Q  145 tgaagttagaatcatgtttgatcaatttcatgaaaatgaagttgtgcctaggagttt 201  Q
    |||| ||||  | |||||||||||||||||||  |||||  | |||| |||||||||    
T  31400258 tgaaattagggtaatgtttgatcaatttcatgctaatgagatcgtgcataggagttt 31400314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 17776401 - 17776500
Alignment:
Q  39 tggaggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttat 138  Q
    ||||||| || ||| |||||||||||||||||||||| ||||||||||||||||||||||  ||||| ||||  ||||||||| ||||||||||||||||    
T  17776401 tggaggaaatagagttggtggtgaaggagagtgatgggaataagagtccgggtccggatggttttaattttgcatttattaagcaattttggtatcttat 17776500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 15841338 - 15841428
Alignment:
Q  42 aggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggta 132  Q
    |||||||||||| ||||||||||||| ||||||   ||||||||||||||||||||| ||| || ||   |||||||||||||||||||||    
T  15841338 aggagattgaggaggtggtgaaggagtgtgatgaagataagagtccgggtccggatggcttcaatttcacttttattaaggaattttggta 15841428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 20986770 - 20986857
Alignment:
Q  54 tggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaa 141  Q
    |||| |||||||||||||||||||||||||||||| |||||||||  || || |||| ||| |||||| | |||||| ||||||||||    
T  20986770 tggtcgtgaaggagagtgatggtaataagagtccgagtccggatgggttcaattttgctttcattaagcatttttggaatcttattaa 20986857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 43458034 - 43458128
Alignment:
Q  47 attgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaa 141  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| | |||||  ||||| |||| |||||||||| |||||||||||||||||||    
T  43458034 attgagatggtggtgaaggagagtgatggtaataagcgtccgggcctggatggatttaattttgcttttattaagcaattttggtatcttattaa 43458128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 23295427 - 23295288
Alignment:
Q  62 aaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaaaaatgaagttagaatcatgt 161  Q
    |||||||||||||||||||| || ||||| |||||||  ||||| |||| |||  ||||| ||||||||||||| ||||| ||||| || |||||  | |    
T  23295427 aaggagagtgatggtaataacagcccgggaccggatggttttaattttgctttctttaagaaattttggtatctcattaagaatgaggtgagaattttct 23295328  T
Q  162 ttgatcaatttcatgaaaatgaagttgtgcctaggagttt 201  Q
    |||||||||| ||||  ||||||||  | |||||||||||    
T  23295327 ttgatcaattccatggtaatgaagtgttccctaggagttt 23295288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 40388195 - 40388087
Alignment:
Q  68 agtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaaaaatgaagttagaatcatgtttgatc 167  Q
    |||||||||||||| |||||| |||||||||  ||||| || |  ||||| || |||||||||||  | || ||| |||| |||||||| ||||| ||||    
T  40388195 agtgatggtaataaaagtccgtgtccggatggttttaatttcgcatttatcaaagaattttggtacttgataaaagatgaggttagaattatgttcgatc 40388096  T
Q  168 aatttcatg 176  Q
    |||||||||    
T  40388095 aatttcatg 40388087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 40198088 - 40197980
Alignment:
Q  68 agtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaaaaatgaagttagaatcatgtttgatc 167  Q
    ||||||||||| || |||||||| |||  ||| ||||| |||| |||| | ||||||||||||||  | || ||| |||| || ||||| |||||||| |    
T  40198088 agtgatggtaacaaaagtccgggcccgagtgaatttaattttgcttttgtgaaggaattttggtacttgatcaaagatgaggtgagaattatgtttgacc 40197989  T
Q  168 aatttcatg 176  Q
    |||||||||    
T  40197988 aatttcatg 40197980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 24616418 - 24616310
Alignment:
Q  24 ttgctcctttttcaatggaggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaagga 123  Q
    ||||||||||  || ||||||||||||||| |||||| |  || ||||||||||  || |||||||  |||||||  ||||| |||| |||| |||| ||    
T  24616418 ttgctcctttcacattggaggagattgaggcggtggttagagatagtgatggtaccaaaagtccggacccggatgggtttaattttgcttttgttaaaga 24616319  T
Q  124 attttggta 132  Q
     ||||||||    
T  24616318 gttttggta 24616310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 48721248 - 48721380
Alignment:
Q  44 gagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttatt-aaa 142  Q
    |||||||||| ||| ||||||||| |||||||| |||| || ||||| |||||||||||||| |||| |||| | ||| | |||||||| |||||| ||     
T  48721248 gagattgaggaggttgtgaaggagtgtgatggtgataaaagcccggggccggatgactttaattttgcttttgtcaagaagttttggta-cttattgaag 48721346  T
Q  143 aatgaagttagaatcatgtttgatcaatttcatg 176  Q
    |||||| ||||||| |||||||||||||||||||    
T  48721347 aatgaaattagaattatgtttgatcaatttcatg 48721380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 49454576 - 49454698
Alignment:
Q  50 gaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaaaaatgaag 149  Q
    |||| ||||||||  || |||||||||  ||| || |||||||||||||  ||||| |||| ||||||||| |||||||||||  | || ||| |||| |    
T  49454576 gaggcggtggtgagagatagtgatggtggtaaaagcccgggtccggatgcttttaattttgcttttattaaagaattttggtacttgataaaagatgagg 49454675  T
Q  150 ttagaatcatgtttgatcaattt 172  Q
    ||||||||||||| |||||||||    
T  49454676 ttagaatcatgttcgatcaattt 49454698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 294
Target Start/End: Complemental strand, 3680615 - 3680386
Alignment:
Q  65 gagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaaaaatgaagttagaatcatgtttg 164  Q
    |||||||||||||| ||||||||||||||| |||  ||||||||||  || ||||| || |||||||||||||| ||  | ||| | ||||| |||||||    
T  3680615 gagagtgatggtaacaagagtccgggtccgaatggttttaactttgcgttcattaaagagttttggtatcttatcaagcacgaaatgagaattatgtttg 3680516  T
Q  165 atcaatttcatgaaaatgaagttgtgcctaggagtttcctaccgtattttgttacattgatcccaaagatgcgtaacccatttactttgaaggagttccg 264  Q
    | ||||| ||||  ||||| || || || ||||| ||  || | ||||||||||| || ||||| ||  |   ||| || ||||||||||||||||| ||    
T  3680515 accaattccatggtaatgaggtggttccgaggagctttttatcctattttgttactttaatccctaaagttaataatccgtttactttgaaggagtttcg 3680416  T
Q  265 acctatttcactcttggggtgtctttataa 294  Q
     |||||||| || || || || ||||||||    
T  3680415 tcctatttcccttttaggatgcctttataa 3680386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 16648372 - 16648533
Alignment:
Q  15 ggggtttaattgctcctttttcaatggaggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttt 114  Q
    |||| |||||||||||||||||  |   |||||||||||||| ||| ||||| ||||| ||  |||| ||| ||||||||||||  | |||||||   ||    
T  16648372 gggggttaattgctcctttttccttattggagattgaggtggcggtaaaggaaagtgaaggggataaaagttcgggtccggatgggtataactttacatt 16648471  T
Q  115 tattaaggaattttggtatcttattaaaaatgaagttagaatcatgtttgatcaatttcatg 176  Q
    ||| ||||| ||||||||| | || || |||||||| || || |||||||||||||| ||||    
T  16648472 tatcaaggagttttggtatttgataaagaatgaagtgaggattatgtttgatcaattccatg 16648533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 25378833 - 25378902
Alignment:
Q  29 cctttttcaatggaggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatg 98  Q
    |||||||| ||||||||||||||  ||||  ||||||||||||||||| ||||||||||||| |||||||    
T  25378833 cctttttctatggaggagattgaattggttttgaaggagagtgatggtgataagagtccggggccggatg 25378902  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 40084782 - 40084893
Alignment:
Q  65 gagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaaaaatgaagttagaatcatgtttg 164  Q
    ||||||||||||| |||||| |||||||||||||  || || ||||  ||| ||||||| ||||||||| | || ||| |||| || ||||| |||||||    
T  40084782 gagagtgatggtagtaagagcccgggtccggatggtttcaattttgcgtttgttaaggagttttggtatttgatcaaacatgaggtaagaataatgtttg 40084881  T
Q  165 atcaatttcatg 176  Q
    | ||||||||||    
T  40084882 accaatttcatg 40084893  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 15196328 - 15196239
Alignment:
Q  43 ggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggta 132  Q
    ||||||||| | ||| ||||||||| |||||||  |||| ||| ||| ||||| ||  ||||| |||| |||||||||||| ||||||||    
T  15196328 ggagattgatgaggttgtgaaggagtgtgatggagataaaagttcggctccgggtggttttaattttgcttttattaaggagttttggta 15196239  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 18023915 - 18023846
Alignment:
Q  29 cctttttcaatggaggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatg 98  Q
    |||||||| |||||||| |||||  ||||  ||||||||||||||||  ||||||| ||||| |||||||    
T  18023915 cctttttctatggaggaaattgaattggttttgaaggagagtgatggagataagagcccggggccggatg 18023846  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 55351273 - 55351376
Alignment:
Q  68 agtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaaaaatgaagttagaatcatgtttgatc 167  Q
    |||||||||||||| || |||||||||||||  ||||| |||| ||||||||| ||||||||| | ||||| ||  ||||||| ||||| |||||||| |    
T  55351273 agtgatggtaataaaagcccgggtccggatggatttaattttgcttttattaaagaattttggcaccttatcaagcatgaagtgagaattatgtttgacc 55351372  T
Q  168 aatt 171  Q
    ||||    
T  55351373 aatt 55351376  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 46616279 - 46616118
Alignment:
Q  26 gctcctttttcaatggaggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaat 125  Q
    ||||||||||| |||||||| ||||| |  ||||||||||| ||||||| | |||| |||  |||||| ||||  ||||| |||| |||| | ||| |||    
T  46616279 gctcctttttcgatggaggaaattgaaggagtggtgaaggatagtgatgatgataaaagtttgggtccagatggttttaattttgcttttgtgaagaaat 46616180  T
Q  126 tttggtatcttatt-aaaaatgaagttagaatcatgtttgatcaatttcatgaaaatgaagtt 187  Q
    |||||||| ||||| |||   || || ||||| |||||||||||||| ||||  |||||||||    
T  46616179 tttggtat-ttattgaaaggggaggtgagaataatgtttgatcaattccatgggaatgaagtt 46616118  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 29080867 - 29080999
Alignment:
Q  44 gagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaaa- 142  Q
    |||||||||| ||| ||||||||  |||||||| |||| || | ||| ||||||| |||||| | ||  ||| ||||||| |||||||| ||| || ||     
T  29080867 gagattgaggaggttgtgaaggaatgtgatggtgataaaagcctggggccggatggctttaattatgcgtttgttaaggagttttggta-cttgttgaag 29080965  T
Q  143 aatgaagttagaatcatgtttgatcaatttcatg 176  Q
    |||||| ||||||| ||||| |||||||||||||    
T  29080966 aatgaaattagaataatgttcgatcaatttcatg 29080999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 47551415 - 47551280
Alignment:
Q  41 gaggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttatta 140  Q
    ||||||||||||| ||| |||||  | |||||||| ||||||||| |||||| |||||  ||||| |||| ||| || |||  |||||||||| | || |    
T  47551415 gaggagattgaggaggttgtgaaataaagtgatgggaataagagttcgggtctggatggttttaattttgctttcatcaagagattttggtatttgatga 47551316  T
Q  141 aaaatgaagttagaatcatgtttgatcaatttcatg 176  Q
    |  |||| || ||||| ||||| |||||||| ||||    
T  47551315 aggatgaggtgagaattatgttcgatcaattccatg 47551280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 22906922 - 22906817
Alignment:
Q  68 agtgatggtaataagagtccgggtccggatgactttaactttgt-ttttattaaggaattttggtatcttattaaaaatgaagttagaatcatgtttgat 166  Q
    ||||||||||| || |||||||| || || | |||||| ||||  |||| |||||||||||||||||||  | ||  ||||| || | ||||||||||||    
T  22906922 agtgatggtaacaaaagtccgggacccgacggctttaattttgcatttttttaaggaattttggtatctcttgaagcatgaaattcgtatcatgtttgat 22906823  T
Q  167 caattt 172  Q
    ||||||    
T  22906822 caattt 22906817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 172
Target Start/End: Complemental strand, 22958590 - 22958485
Alignment:
Q  68 agtgatggtaataagagtccgggtccggatgactttaactttgt-ttttattaaggaattttggtatcttattaaaaatgaagttagaatcatgtttgat 166  Q
    ||||||||||| || |||||||| || || | |||||| ||||  |||| |||||||||||||||||||  | ||  ||||| || | ||||||||||||    
T  22958590 agtgatggtaacaaaagtccgggacccgacggctttaattttgcatttttttaaggaattttggtatctcttgaagcatgaaattcgtatcatgtttgat 22958491  T
Q  167 caattt 172  Q
    ||||||    
T  22958490 caattt 22958485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 13852277 - 13852309
Alignment:
Q  144 atgaagttagaatcatgtttgatcaatttcatg 176  Q
    ||||||| |||||||||||||||||||||||||    
T  13852277 atgaagtaagaatcatgtttgatcaatttcatg 13852309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 12829498 - 12829388
Alignment:
Q  23 attgctcctttttcaatggaggagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaagg 122  Q
    |||||||||||||| |||  ||||||||||| |||||||||||||||||| || || || ||| ||||  ||||||  ||||| |||| |||| | ||||    
T  12829498 attgctcctttttcgatgttggagattgaggcggtggtgaaggagagtgacgggaacaaaagttcggggacggatggttttaattttggttttgtgaagg 12829399  T
Q  123 aattttggtat 133  Q
    |||||||||||    
T  12829398 aattttggtat 12829388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 6229926 - 6230059
Alignment:
Q  68 agtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaaaaatgaagttagaatcatgtttgatc 167  Q
    |||||||| |||||||| ||||| |||||||  ||||| |||| |||  | || |||||||||||||| |||||  ||||||| ||||| ||||||||||    
T  6229926 agtgatggaaataagagcccgggcccggatggttttaattttgctttcttgaaagaattttggtatctaattaagcatgaagtgagaattatgtttgatc 6230025  T
Q  168 aatttcatgaaaatgaagttgtgcctaggagttt 201  Q
    |||| ||||  ||||| || ||||| | ||||||    
T  6230026 aattccatggtaatgaggtggtgccgaagagttt 6230059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 44162460 - 44162557
Alignment:
Q  86 ccgggtccggatgactttaactttgtttttattaaggaatttt-ggtatcttattaaaaatgaagttagaatcatgtttgatcaatttcatgaaaatg 182  Q
    ||||| |||||||  ||||| |||| |||||||||||| |||| ||||  | |||||| ||||||||||||| ||||||||||||||||||| |||||    
T  44162460 ccgggaccggatggttttaattttgcttttattaaggattttttggtacttgattaaagatgaagttagaattatgtttgatcaatttcatgcaaatg 44162557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 171
Target Start/End: Original strand, 41447931 - 41448058
Alignment:
Q  44 gagattgaggtggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatcttattaaaa 143  Q
    |||||||||| ||| || ||||| |||||| |  |||| ||| |||||||||| |  ||||||||||  ||||||||||| ||||||||| | || ||||    
T  41447931 gagattgaggcggtcgtaaaggaaagtgatagggataaaagttcgggtccggacgggtttaactttgcatttattaaggagttttggtatttgataaaaa 41448030  T
Q  144 atgaagttagaatcatgtttgatcaatt 171  Q
    |||| || || || ||||||||||||||    
T  41448031 atgaggtgaggataatgtttgatcaatt 41448058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 31052753 - 31052834
Alignment:
Q  55 ggtggtgaaggagagtgatggtaataagagtccgggtccggatgactttaactttgtttttattaaggaattttggtatctt 136  Q
    |||||||||||| |||||| ||  |||||||||||| ||||||   ||||||  ||||||| | ||||||||||||||||||    
T  31052753 ggtggtgaaggaaagtgatagtggtaagagtccgggcccggatagttttaacaatgtttttttgaaggaattttggtatctt 31052834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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