View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20125_low_13 (Length: 390)
Name: NF20125_low_13
Description: NF20125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20125_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 19219576 - 19219949
Alignment:
| Q |
1 |
ctatgatgctgatccaaatgttctacttgctttctcaaaatcaaatgttgaatttgttataggaattggaaatgagcatttacaaaatatgacaaaccct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19219576 |
ctatgatgctgatccaaatgttctacttgctttctcaaaatcaaatgttgaatttgttataggaattggaaatgagcatttacaaaatatgacaaaccct |
19219675 |
T |
|
| Q |
101 |
tctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaattgcataactgttggaaatgaagtattcaatagcaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19219676 |
tctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaattgcataactgttggaaatgaagtattcaatagcaatg |
19219775 |
T |
|
| Q |
201 |
atactcaattaattttgaatcttctaccttcaatgcaaaatgttcataattctcttgttaagcttggattagaccaagtaattactgttacaacagctca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19219776 |
atactcaattaattttgaatcttctaccttcaatgcaaaatgttcataattctcttgttaagcttggattagaccaagtaattactgttacaacagctca |
19219875 |
T |
|
| Q |
301 |
ttcttttaacattttggataattcttaccctccttcgtccggttcttttaggtcagatttgattcaatatattc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19219876 |
ttcttttaacattttggataattcttaccctccttcgtccggttcttttaggtcagatttgattcaatatattc |
19219949 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 68 - 242
Target Start/End: Original strand, 29364935 - 29365110
Alignment:
| Q |
68 |
ggaaatgagcatttacaaaatatgacaaacccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaatt-gc |
166 |
Q |
| |
|
||||||||| || | || ||||||||| ||| ||| |||||||| | ||||||||| || ||||||| ||||||||||||||| | |||||| | || || |
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| T |
29364935 |
ggaaatgagtatctgcagaatatgacagacctttcaaaagctcatacttggattcagcagcatgttcaaccttacctttcacagatcaaaatgattttgc |
29365034 |
T |
|
| Q |
167 |
ataactgttggaaatgaagtattcaatagcaatgatactcaattaattttgaatcttctaccttcaatgcaaaatg |
242 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |||| ||||| ||||| || ||||||||||||| |
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| T |
29365035 |
ataactgtgggaaatgaggtattcaatagcaatgatactcagataatgttgaaccttctcccatcaatgcaaaatg |
29365110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 24258171 - 24258346
Alignment:
| Q |
69 |
gaaatgagcatttacaaaatatgacaaacccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaatt-gca |
167 |
Q |
| |
|
|||||||| || | || ||||||||| ||| ||| |||||||| | ||||||||| || ||||||| ||||||||||||||| | |||||| | || ||| |
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| T |
24258171 |
gaaatgagtatatgcagaatatgacagacctttcaaaagctcagacttggattcagcaccatgttcaaccttacctttcacagatcaaaattactttgca |
24258270 |
T |
|
| Q |
168 |
taactgttggaaatgaagtattcaatagcaatgatactcaattaattttgaatcttctaccttcaatgcaaaatgt |
243 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||| |||| ||||| ||| | || |||||||||||||| |
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|
| T |
24258271 |
taactgtgggaaatgaggtattcaatagcaatgatactcagataatgttgaaccttttcccatcaatgcaaaatgt |
24258346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 69 - 240
Target Start/End: Complemental strand, 29899234 - 29899062
Alignment:
| Q |
69 |
gaaatgagcatttacaaaatatgacaaacccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaatt-gca |
167 |
Q |
| |
|
|||||||| || | || ||||||||| ||| ||| |||| || || ||||||||| || ||||||| |||||| ||||| |||| |||||||| || ||| |
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|
| T |
29899234 |
gaaatgagtatctgcagaatatgacagacctttcaaaagatctaacttggattcagcaccatgttcaaccttatctttcgcaaatcaaaataactttgca |
29899135 |
T |
|
| Q |
168 |
taactgttggaaatgaagtattcaatagcaatgatactcaattaattttgaatcttctaccttcaatgcaaaa |
240 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||| |||| ||||| ||||| || |||||||||| |
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|
| T |
29899134 |
taactgtgggaaatgaggtattcaatagcaatgatactcagataatgttgaaccttctcccaccaatgcaaaa |
29899062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 242
Target Start/End: Original strand, 29346408 - 29346583
Alignment:
| Q |
68 |
ggaaatgagcatttacaaaatatgacaaacccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaatt-gc |
166 |
Q |
| |
|
||||||||| || | || ||||||||| ||| ||| ||||||| | ||||||||| | ||||||| ||||||||||||||||| |||||| | || || |
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|
| T |
29346408 |
ggaaatgagtatctgcagaatatgacagacctttcaaaagctcggacttggattcaggaccatgttccaccttacctttcacaaatcaaaatgactttgc |
29346507 |
T |
|
| Q |
167 |
ataactgttggaaatgaagtattcaatagcaatgatactcaattaattttgaatcttctaccttcaatgcaaaatg |
242 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||| | |||| ||||| ||||| || |||||||||||| |
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|
| T |
29346508 |
ataactgtgggaaatgaggtattcaatagcaatgatacttagataatgttgaaacttctcccaccaatgcaaaatg |
29346583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 29355056 - 29355200
Alignment:
| Q |
96 |
acccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaattgcataactgttggaaatgaagtattcaatag |
195 |
Q |
| |
|
||||||||||| ||| | |||||| || || ||||| | ||||||||||||| |||| ||||||| |||||||||| | |||||||| ||||||||||| |
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| T |
29355056 |
acccttctaaatctccagcttggatacagcaccatgtccaaccttacctttcagaaacaaaaataacttgcataactctgggaaatgaggtattcaatag |
29355155 |
T |
|
| Q |
196 |
caatgatactcaattaattttgaatcttctaccttcaatgcaaaa |
240 |
Q |
| |
|
|||||| ||||| ||| ||||| ||||| || ||||||||||| |
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|
| T |
29355156 |
caatgagactcagccaatgttgaaccttcttccatcaatgcaaaa |
29355200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 243
Target Start/End: Complemental strand, 29888258 - 29888120
Alignment:
| Q |
104 |
aaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaatt-gcataactgttggaaatgaagtattcaatagcaatgat |
202 |
Q |
| |
|
|||||||| | ||||||||| | ||||||| | |||||||||| |||| |||||||| || |||||||||| |||||||| ||||||||||| |||||| |
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|
| T |
29888258 |
aaagctcagacttggattcagc--catgttcaaacttacctttcgcaaatcaaaataactttgcataactgtgggaaatgaggtattcaatagaaatgat |
29888161 |
T |
|
| Q |
203 |
actcaattaattttgaatcttctaccttcaatgcaaaatgt |
243 |
Q |
| |
|
||||| |||| ||||| ||| | || |||||||||||||| |
|
|
| T |
29888160 |
actcagataatgttgaaccttttcccatcaatgcaaaatgt |
29888120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 24262678 - 24262804
Alignment:
| Q |
115 |
ttggattcaacatcatgttctaccttacctttcacaaaccaaaataaatt-gcataactgttggaaatgaagtattcaatagcaatgatactcaattaat |
213 |
Q |
| |
|
||||||||| | ||||||| |||||| |||||| ||| |||||| | || |||||||||| |||||||| ||||||||||||||||||||||| |||| |
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|
| T |
24262678 |
ttggattcagcgccatgttcaaccttatctttcataaatcaaaattactttgcataactgtgggaaatgaggtattcaatagcaatgatactcagataat |
24262777 |
T |
|
| Q |
214 |
tttgaatcttctaccttcaatgcaaaa |
240 |
Q |
| |
|
||||| ||||| || |||||||||| |
|
|
| T |
24262778 |
gttgaaccttctcccaccaatgcaaaa |
24262804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 243
Target Start/End: Original strand, 24271108 - 24271281
Alignment:
| Q |
69 |
gaaatgagcatttacaaaatatgacaaacccttctaaagctcaaaattggattcaacatcatgttctaccttacctttcacaaaccaaaataaattgc-a |
167 |
Q |
| |
|
|||||||| || | || ||||||||| ||| ||| |||||||| | ||||||||| | | ||||| | |||||||||| |||| |||||||| || | | |
|
|
| T |
24271108 |
gaaatgagtatatgcagaatatgacagacctttcaaaagctcagacttggattcagcct--tgttcaaacttacctttcgcaaatcaaaataactttcca |
24271205 |
T |
|
| Q |
168 |
taactgttggaaatgaagtattcaatagcaatgatactcaattaattttgaatcttctaccttcaatgcaaaatgt |
243 |
Q |
| |
|
||| ||| ||| |||| |||||||||||||||||||||| |||| ||||| ||| | || |||||||||||||| |
|
|
| T |
24271206 |
taattgtgggagatgaggtattcaatagcaatgatactcggataatgttgaaccttttcccatcaatgcaaaatgt |
24271281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 29916654 - 29916584
Alignment:
| Q |
52 |
atttgttataggaattggaaatgagcatttacaaaatatgacaaacccttctaaagctcaaaattggattc |
122 |
Q |
| |
|
||||||||||||| |||||||||||||| | || ||||||||| ||| ||| ||||||| || |||||||| |
|
|
| T |
29916654 |
atttgttataggacttggaaatgagcatctgcagaatatgacagacctttcaaaagctctaacttggattc |
29916584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 29916556 - 29916468
Alignment:
| Q |
115 |
ttggattcaacatcatgttctaccttacctttcacaaacc-aaaataaatt-gcataactgttggaaatgaagtattcaatagcaatga |
201 |
Q |
| |
|
|||||||| || ||||||| ||||||| ||||||||| | ||||||| || |||||||||| ||| |||| |||||||||| |||||| |
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|
| T |
29916556 |
ttggattcggcaccatgttcaaccttacttttcacaaatcgaaaataactttgcataactgtcggagatgaggtattcaataacaatga |
29916468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36381213 - 36381266
Alignment:
| Q |
1 |
ctatgatgctgatccaaatgttctacttgctttctcaaaatcaaatgttgaatt |
54 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| |||||||||||||| |
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|
| T |
36381213 |
ctatgatgctgatccaaatgttctaacaacattctcaaattcaaatgttgaatt |
36381266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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